You will find here exercise sets on various topics of populations genetics using R and various packages developed for population genetic analyses, most notably:
- coala
- adegenet
- ape
- learnPopGen
- pegas
- vcfR
The classes are are in the form of Rmarkdown files, that can be easily converted to various format (pdf, html). However, the files provided here are built assuming they would be converted to the pdf files.
To easily compile the Rmarkdown documents (.Rmd) you can use the R package rmarkdown. The following instructions assume you have it installed.
# clone the repository
git clone https://github.com/ckastall/population_genetics_class
# compile all classes
make