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Update styling#3

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CBroz1 merged 1 commit into
datajoint:mainfrom
guzman-raphael:styling
Sep 23, 2022
Merged

Update styling#3
CBroz1 merged 1 commit into
datajoint:mainfrom
guzman-raphael:styling

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@CBroz1 CBroz1 merged commit de67753 into datajoint:main Sep 23, 2022
dimitri-yatsenko added a commit that referenced this pull request Jan 14, 2026
Addresses gap identified in cohesion review (COHESION-REVIEW.md Issue #3):
- Missing authoritative guidance on .secrets/ structure
- Configuration priority not clearly documented
- No systematic coverage of credentials management across environments

New guide (manage-secrets.md) provides:
- Complete .secrets/ directory structure and usage
- Configuration priority order (programmatic > env > secrets > config > defaults)
- Database credentials (3 options: secrets dir, env vars, programmatic)
- Object storage credentials (file-based and env-based)
- Environment variable reference tables
- Security best practices for dev, prod, CI/CD, Docker, cloud
- Common patterns and troubleshooting
- Configuration templates for different scenarios

Also:
- Added to how-to/index.md under Setup section
- Regenerated llms-full.txt

Impact:
- New users have clear guidance on secure configuration
- Covers all environments: local dev, production, CI/CD, containers, cloud
- Complements configure-database.md and configure-storage.md with security focus

Fixes: COHESION-REVIEW.md Issue #3 (High Priority)
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