davidjimgar5
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RAxML Next Generation: faster, easier-to-use and more flexible
Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
A package for population structure inference from RAD-seq data
Convert bi-allelic SNPs stored in VCF files to various population genetic data formats.
Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species
contains all the personal code necessary to run my projects associated scripts (Python anr R libraries as well as some other commands)
Some scripts to run faststructure, pca and heterozygosity on multiple VCFs, and then plot them.
Collection of wrappers, pipelines, and some original tools for analysis of population and phylogenetic datasets.
Convert bi-allelic SNPs stored in VCF format to STRUCTURE format.
Scripts used to analyze the data and generate the graphics in: "Genetic similarities versus morphological resemblance"
Scripts used for bioacoustic and morphological analyses to evaluate variations among populations/taxa.
A series of R functions for summarizing the outputs of the program Structure
Data and scripts for Hipp et al. 2019, New Phytologist, Genomic landscape of the global oak phylogeny