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merge devel into master#336

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amcadmus merged 15 commits into
deepmodeling:masterfrom
amcadmus:master
Aug 3, 2022
Merged

merge devel into master#336
amcadmus merged 15 commits into
deepmodeling:masterfrom
amcadmus:master

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@amcadmus

@amcadmus amcadmus commented Aug 3, 2022

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amcadmus and others added 15 commits June 15, 2022 19:26
Co-authored-by: Han Wang <wang_han@iapcm.ac.cn>
* add gaussian input format and driver

* add more tests

* add tests; use formula as title
* fix a bug, now ck2p/aimd_output can generate virial.raw

* Delete test.py

* Update output.py

Signed-off-by: HuangJiameng <105633685+HuangJiameng@users.noreply.github.com>

* Update output.py

Signed-off-by: HuangJiameng <105633685+HuangJiameng@users.noreply.github.com>

* add unittest for aimd_output with stress

* add cp2k.log

Co-authored-by: Han Wang <amcadmus@gmail.com>
* improve accuracy of sqm input coordinates

Coordinates with 4 digits are enough for energy calculation but not enough for energy minimization.

* fix tests

* increase the string length of the number
* test: add UT for to_system for abacus interface

* update atomic mass in abacus.scf/stru_test
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codecov-commenter commented Aug 3, 2022

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Codecov Report

Merging #336 (44db168) into master (64805b9) will increase coverage by 0.04%.
The diff coverage is 82.50%.

@@            Coverage Diff             @@
##           master     #336      +/-   ##
==========================================
+ Coverage   82.11%   82.15%   +0.04%     
==========================================
  Files          63       66       +3     
  Lines        5429     5784     +355     
==========================================
+ Hits         4458     4752     +294     
- Misses        971     1032      +61     
Impacted Files Coverage Δ
dpdata/cli.py 0.00% <0.00%> (ø)
dpdata/qe/traj.py 81.20% <12.50%> (-4.01%) ⬇️
dpdata/plugins/gaussian.py 62.22% <46.87%> (-37.78%) ⬇️
dpdata/gaussian/gjf.py 74.75% <74.75%> (ø)
dpdata/system.py 84.70% <88.88%> (+0.05%) ⬆️
dpdata/abacus/relax.py 92.72% <92.72%> (ø)
dpdata/abacus/scf.py 91.10% <100.00%> (ø)
dpdata/amber/sqm.py 98.85% <100.00%> (ø)
dpdata/cp2k/output.py 97.84% <100.00%> (+0.49%) ⬆️
dpdata/plugins/abacus.py 100.00% <100.00%> (ø)
... and 2 more

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@amcadmus amcadmus merged commit 0db9246 into deepmodeling:master Aug 3, 2022
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8 participants