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EvoChange

Genomics of Evolutionary Change – CIBIO-InBIO, U. Porto

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  1. hare-phylogenomics hare-phylogenomics Public

    Pipeline for phylogenomic analyses using whole-exome data from closely related species

    R 4 1

  2. far far Public

    Python

  3. coat_color_change_transcriptomics coat_color_change_transcriptomics Public

    Pipeline and scripts necessary for the analysis of RNA-Sequencing data from the mountain hare (Lepus timidus) fall moult

    Python

  4. least_weasel_SCC_polymorphism_genetic_basis least_weasel_SCC_polymorphism_genetic_basis Public

    Custom code used for population genomic analyses and mapping of winter colour polymorphism using WGS data from least weasels (Mustela nivalis).

    Python 1

  5. complex_genome_admixture_in_broom_hares complex_genome_admixture_in_broom_hares Public

    1

  6. BGE-MyxoHares-case-study BGE-MyxoHares-case-study Public

    Reproducible analysis pipelines for the BGE MyxoHares case study, covering host WGS processing, variant calling, population genomics, and detection of Myxoma virus and co-infectants. Includes scrip…

    Shell

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