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1. Montmorency_genome Montmorency_genome Public

   All unix-based scripts for assembly, annotation, and downstream analyses of for the Prunus cerasus cv. Montmorency genome project

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2. sourcherry_bloomtime sourcherry_bloomtime Public

   All datasets, code, and scripts for the 4th chapter of my dissertation work.

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3. Cases_for_apomixis_in_flowering_plants Cases_for_apomixis_in_flowering_plants Public

   Code for making a phylogenetic tree showing documented cases of apomixis as of Aug/Sept 2023. Data was downloaded from the apomixis database, first introduced in Hojsgaard et al. 2014: https://uni-…

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4. high-throughput-sequencing-screen-for-apomixis high-throughput-sequencing-screen-for-apomixis Public

   We sequenced apple embryos at low coverage and the maternal genotype to test for clonal progeny (apomixis). This repository contains code and sample metadata for running the variant calling and vis…

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