Compatability updates

.github/workflows/CI_build.yml

@@ -38,12 +38,12 @@ jobs:
       - name: Check whether import statements are used consistently
         shell: bash -l {0}
         run: poetry run isort --check-only --diff --conda-env spec2vec-dev .
-      # - name: SonarCloud Scan
-      #   if: github.repository == 'iomega/spec2vec'
-      #   uses: sonarsource/sonarcloud-github-action@master
-      #   env:
-      #     GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-      #     SONAR_TOKEN: ${{ secrets.SONAR_TOKEN }}
+      - name: SonarQube Scan
+        if: github.repository == 'iomega/spec2vec'
+        uses: SonarSource/sonarqube-scan-action@master
+        env:
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+          SONAR_TOKEN: ${{ secrets.SONAR_TOKEN }}
 
   build_pypi:
     name: Pypi and documentation build / python-${{ matrix.python-version }} / ${{ matrix.os }}
@@ -148,7 +148,7 @@ jobs:
           [ "$RUNNING_OS" = "Windows" ] && export BUILDDIR=$RUNNER_TEMP\\spec2vec\\_build\\
           conda config --set anaconda_upload no
           conda build --no-include-recipe \
-            --channel bioconda --channel conda-forge \
+            --channel conda-forge --channel bioconda \
             --croot ${BUILDDIR} \
             ./conda
       - name: Upload package artifact from build

CHANGELOG.md

@@ -7,6 +7,20 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ## [Unreleased]
 
+## [0.9.0] - 2025-10-20
+### Changed
+- Added loss_mz_from and loss_mz_to to SpectrumDocument [#95](https://github.com/iomega/spec2vec/pull/95)
+- Updated required matchms version to >=0.27.0 [#95](https://github.com/iomega/spec2vec/pull/95)
+- Updated required Python version to >=3.10 [#95](https://github.com/iomega/spec2vec/pull/95)
+- Moved to poetry [#95](https://github.com/iomega/spec2vec/pull/95)
+- Updated CI_build workflow to use poetry and actions [#95](https://github.com/iomega/spec2vec/pull/95)
+- Added sparse array type handling and tests [#95](https://github.com/iomega/spec2vec/pull/95)
+
+### Fixed
+
+- Fixed missing keyword in model dict [#95](https://github.com/iomega/spec2vec/pull/95)
+- Fixed documentation [#95](https://github.com/iomega/spec2vec/pull/95)
+
 ## [0.8.1] - 2024-08-06
 ### Changed
 - Set max matchms to 0.26.4
@@ -147,7 +161,9 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 - Fossa configuration
 - Flowchart
 
-[Unreleased]: https://github.com/iomega/spec2vec/compare/0.8.0...HEAD
+[Unreleased]: https://github.com/iomega/spec2vec/compare/0.9.0...HEAD
+[0.9.0]: https://github.com/iomega/spec2vec/compare/0.8.1...0.9.0
+[0.8.1]: https://github.com/iomega/spec2vec/compare/0.8.0...0.8.1
 [0.8.0]: https://github.com/iomega/spec2vec/compare/0.6.0...0.7.0
 [0.7.0]: https://github.com/iomega/spec2vec/compare/0.6.0...0.7.0
 [0.6.0]: https://github.com/iomega/spec2vec/compare/0.5.0...0.6.0

conda/environment-build.yml

@@ -5,4 +5,4 @@ dependencies:
   - anaconda-client
   - conda-build
   - conda-verify
-  - python >=3.7
+  - python >=3.10

conda/environment-dev.yml

@@ -5,7 +5,7 @@ channels:
   - defaults
 dependencies:
   - python
-  - gensim >=4.3.3
+  - gensim >=4.4.0
   - matchms >=0.27.0
   - numba
   - numpy

conda/meta.yaml

@@ -1,5 +1,5 @@
 {% set name = "spec2vec" %}
-{% set version = "0.8.1" %}
+{% set version = "0.9.0" %}
 
 package:
   name: {{ name|lower }}
@@ -18,14 +18,17 @@ requirements:
     - python
     - poetry
   host:
-    - python >=3.10
+    - python >=3.10, <3.14
     - poetry
     - pip
   run:
-    - python >=3.10
-    - gensim >=4.3.3
+    - python >=3.10, <3.14
+    - gensim >=4.4.0
     - matchms >=0.27.0
     - tqdm
+    - lxml >=4.9.3, <6.0.0
+    - rdkit >=2024.3.5, <2025.0.0
+    - numba >=0.60, <0.62
 
 test:
   imports:

pyproject.toml

@@ -14,9 +14,9 @@ keywords = [
 ]
 
 [tool.poetry.dependencies]
-python = ">=3.10,<3.13"
-gensim = "^4.3.3"
-matchms = "^0.27.0"
+python = ">=3.10,<3.14"
+gensim = "^4.4.0"
+matchms = ">=0.27.0"
 tqdm = "^4.66.5"
 
 [tool.poetry.group.dev.dependencies]

spec2vec/__version__.py

@@ -1 +1 @@
-__version__ = '0.8.1'
+__version__ = '0.9.0'