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Write SAM or BAM format files.

Status: Open.

#141 In jdidion/atropos;

· brgew opened on Mar 28, 2025

--nextseq-trim parameter settings

Status: Open.

#140 In jdidion/atropos;

· matt-bakker opened on Feb 11, 2025

Atropos was stuck while waiting for a subprocess or worker thread to finish

Status: Open.

#139 In jdidion/atropos;

· dgpinheiro opened on Nov 21, 2024

Move CI to github actions

Status: Open.

#134 In jdidion/atropos;

· jdidion opened on Dec 21, 2022

Install Error

Status: Open.

#132 In jdidion/atropos;

· JChristopherEllis opened on Dec 21, 2022

defaults not listed in cli docs

Status: Open.

#130 In jdidion/atropos;

· nick-youngblut opened on Jan 16, 2022

detect: --max-reads default

Status: Open.

#129 In jdidion/atropos;

· nick-youngblut opened on Jan 16, 2022

Can atropos remove 5' adapter variants that are incomplete from the tail?

Status: Open.

#128 In jdidion/atropos;

· lokapal opened on Aug 7, 2021

error while running the detect command

Status: Open.

#127 In jdidion/atropos;

· manasakaringula opened on Jul 1, 2021

Bioconda atropos package tied to python 3.6

Status: Open.

#123 In jdidion/atropos;

· gabeng opened on Jan 10, 2021

Implement non-internal adapters

enhancement

Status: Open.

#119 In jdidion/atropos;

· jdidion opened on Aug 14, 2020

Add configuration option to choose which library to use for reading BAM

enhancement

Status: Open.

#99 In jdidion/atropos;

· jdidion opened on May 8, 2020