import_qiime couldn't parse the otu table of "taxonomy" column name #1253
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xiangpin wants to merge 4 commits intojoey711:masterfrom
Open
import_qiime couldn't parse the otu table of "taxonomy" column name #1253xiangpin wants to merge 4 commits intojoey711:masterfrom
xiangpin wants to merge 4 commits intojoey711:masterfrom
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name of taxa column in otu table is not always “Consensus Lineage”. So I use
tmpname <-colnames(x)[!unlist(lapply(x,function(i)is.numeric(i)))]to extract the column names of taxa.