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TIMPI 1.1.3 update #2648

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Merged
roystgnr merged 2 commits into from
Jul 15, 2020
Merged

TIMPI 1.1.3 update #2648

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0258e72
Update contrib/timpi to v1.1.3_bootstrapped
roystgnr Jul 15, 2020
c111836
Use new TIMPI buffer size arguments
roystgnr Jul 15, 2020
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2 changes: 1 addition & 1 deletion contrib/timpi
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Submodule timpi updated 21 files
+5 −0 Makefile.am
+5 −0 Makefile.in
+9 −0 NEWS
+148 −0 bin/test_headers.sh
+6 −0 bootstrap
+7 −3 build-aux/config.guess
+3 −3 build-aux/config.sub
+177 −73 build-aux/ltmain.sh
+75 −30 configure
+1 −1 configure.ac
+40 −15 m4/libtool.m4
+26 −0 src/Makefile.am
+26 −0 src/Makefile.in
+24 −20 src/algorithms/include/timpi/parallel_sync.h
+52 −6 src/parallel/include/timpi/communicator.h
+3 −3 src/parallel/include/timpi/packing.h
+59 −228 src/parallel/include/timpi/parallel_implementation.h
+260 −0 src/parallel/include/timpi/serial_implementation.h
+49 −5 src/parallel/include/timpi/standard_type.h
+1 −0 test/Makefile.in
+92 −0 test/packed_range_unit.C
17 changes: 13 additions & 4 deletions src/mesh/mesh_communication.C
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Original file line number Diff line number Diff line change
Expand Up @@ -1183,18 +1183,25 @@ void MeshCommunication::gather (const processor_id_type root_id, DistributedMesh

LOG_SCOPE("(all)gather()", "MeshCommunication");

// Ensure we don't build too big a buffer at once
static const std::size_t approx_total_buffer_size = 1e8;
const std::size_t approx_each_buffer_size =
approx_total_buffer_size / mesh.comm().size();

(root_id == DofObject::invalid_processor_id) ?

mesh.comm().allgather_packed_range (&mesh,
mesh.nodes_begin(),
mesh.nodes_end(),
mesh_inserter_iterator<Node>(mesh)) :
mesh_inserter_iterator<Node>(mesh),
approx_each_buffer_size) :

mesh.comm().gather_packed_range (root_id,
&mesh,
mesh.nodes_begin(),
mesh.nodes_end(),
mesh_inserter_iterator<Node>(mesh));
mesh_inserter_iterator<Node>(mesh),
approx_each_buffer_size);

// Gather elements from coarsest to finest, so that child
// elements will see their parents already in place.
Expand All @@ -1206,13 +1213,15 @@ void MeshCommunication::gather (const processor_id_type root_id, DistributedMesh
mesh.comm().allgather_packed_range (&mesh,
mesh.level_elements_begin(l),
mesh.level_elements_end(l),
mesh_inserter_iterator<Elem>(mesh)) :
mesh_inserter_iterator<Elem>(mesh),
approx_each_buffer_size) :

mesh.comm().gather_packed_range (root_id,
&mesh,
mesh.level_elements_begin(l),
mesh.level_elements_end(l),
mesh_inserter_iterator<Elem>(mesh));
mesh_inserter_iterator<Elem>(mesh),
approx_each_buffer_size);

// If we had a point locator, it's invalid now that there are new
// elements it can't locate.
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