A bioinformatics tool for viewing and calculating base modification frequencies from BAM files

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Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement

The RY partitioning engine

A unified interface for AI in your terminal.

A free, open source, and extensible speech-to-text application that works completely offline.

VOICE → WORDS

A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing

Visualization tool for (meta)genome assembly graphs

Firmware for the Xteink X4 e-paper display reader

A minimalistic wiki powered by python, markdown and git.

FineTune, a macOS menu bar app for per-app volume control, multi-device output, audio routing, and 10-band EQ. Free and open-source alternative to SoundSource.

Bichon – A lightweight, high-performance Rust email archiver with WebUI

An agentic skills framework & software development methodology that works.

High-accuracy SNV calling for bacterial isolates using deep learning

Simplifying reinforcement learning for complex game environments

A Neovim based strudel.cc controller, live coding using Strudel from Neovim.

A set of ready to use Agent Skills for research, science, engineering, analysis, finance and writing.

Easy monorepos with Python and uv

Build effective agents using Model Context Protocol and simple workflow patterns

Zotero MCP: Connects your Zotero research library with Claude and other AI assistants via the Model Context Protocol to discuss papers, get summaries, analyze citations, and more.

Pyzotero: a Python client for the Zotero API

Discovery of conserved gene clusters in multiple genomes

Fast DNA search and [host] depletion using minimizers

Fast and haplotype-aware assembler

Leviathan: A fast, memory-efficient, and scalable taxonomic and pathway profiler for (pan)genome-resolved metagenomics and metatranscriptomics

Get your documents ready for gen AI

Method Draw, the SVG Editor for Method of Action