Consistent long-distance foraging flights across years and seasons at colony level in a Neotropical bat
This repository presents the analysis workflow to test how Phyllostomus hastatus shows consistent foraging flights across years and colonies. The code requires personal login information for movebank and stadia maps.
This code is part of the following publication: Calderón-Capote MC, van ToorML, O’Mara MT, Bayer TD, Crofoot MC, DechmannDKN. 2024 Consistent long-distance foragingflights across years and seasons at colony level ina neotropical bat. Biol. Lett. 20: 20240424. doi: https://doi.org/10.1098/rsbl.2024.0424
The code follows as:
- CleaningData_Bocas2021-2022_gh
- CleaningData_2023_gh
- CleaningData_2016_gh
- Merge_alldata
- Behavioral_classification
- MainlandForaging_Figure1
- Straightness
- phyllostomus_appendix_stan_models.qmd
- phyllostomus_appendix_simulations.qmd
- Figure_1_gh
- FigureS4_gh
Additionally this repository contains the appendixes of the stan models and the simulations used in this paper.
Colonies have been renamed in the code and in the manuscript as colonies 1, 2, and 3. Original names during the capturing/tagging process are:
- La Gruta = colony 1
- Aj cave = colony 2
- Muddy cave= colony 3