VariantAnnotationToolkit

VATK! A collection of helper scripts to annotate and sort variants

Name		Name	Last commit message	Last commit date
Latest commit History 33 Commits
archive		archive
utilities		utilities
ANNOVARv3.sh		ANNOVARv3.sh
ANNOVARv3_Mckenzie.sh		ANNOVARv3_Mckenzie.sh
ANNOVARv3_for_hg38.sh		ANNOVARv3_for_hg38.sh
ANNOVARv3_for_hg38_Kat_ASD_2024.sh		ANNOVARv3_for_hg38_Kat_ASD_2024.sh
AnnovarGenomeSummaryCombo.v2.sh		AnnovarGenomeSummaryCombo.v2.sh
AnnovarGenomeSummaryCombo.v2_for_hg38.sh		AnnovarGenomeSummaryCombo.v2_for_hg38.sh
BWA-Picard-GATK-CleanUp.sh		BWA-Picard-GATK-CleanUp.sh
Func.Gene.Remove.txt		Func.Gene.Remove.txt
README.md		README.md
VCFSplitWithGATKv4_ali.sh		VCFSplitWithGATKv4_ali.sh
VCFSplitWithGATKv4_hg38.sh		VCFSplitWithGATKv4_hg38.sh
annovar_combine_csv.py		annovar_combine_csv.py
familyKeyMatchingAfterANNOVAR_hg38.py		familyKeyMatchingAfterANNOVAR_hg38.py
preConceptionTesting.py		preConceptionTesting.py
splitMultiANNOVAR.py		splitMultiANNOVAR.py
trioKeyMatchingAfterANNOVAR_hg38.py		trioKeyMatchingAfterANNOVAR_hg38.py
twinKeyMatchingAfterANNOVAR050319.sh		twinKeyMatchingAfterANNOVAR050319.sh
vcfFamilyBasedFilterAndAnnotate_hg38.sh		vcfFamilyBasedFilterAndAnnotate_hg38.sh

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