Renaming pipeline into spatialaxe - #162
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renaming sync
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Do not merge or review yet because some stuff is and might still be missing. |
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Naming issue we have now is that some of the test data in nf-core is placed under spatialxe (e.g., |
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Test data branch will be renamed to solve the previous comment. |
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Can be reviewed now. |
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| homePage = 'https://github.com/nf-core/spatialxe' | ||
| homePage = 'https://github.com/nf-core/spatialaxe' | ||
| description = """A pipeline for spatialomics 10x Xenium In Situ data.""" |
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I think we can also update the description
description = """A pipeline to process spatialomics data from 10x Xenium In Situ or 10x Atera."""
This was referenced May 28, 2026
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The initial base renaming was done with `nf-core pipeline snyc' using template v3.5.2.
A statement for the Atera data was included in the README.
PR checklist
nf-core lint).nextflow run . -profile test,docker --outdir <OUTDIR>).