Skip to content
This repository was archived by the owner on Feb 16, 2025. It is now read-only.

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 

History

332 Commits
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 

Repository files navigation

This repository has been added to the pbqff monorepo. See that repository for ongoing development.

INTDER

intder performs simple-/symmetry-internal coordinate transformations for geometry displacements and derivatives. This is a port of the original Fortran INTDER program by Wesley D. Allen and coworkers.

Input

The input format is compatible with the original Fortran version, but whitespace is much less significant. Fields just need to be separated by some number of tabs or spaces.

Displacements

A simple input file for converting 4 SIC displacements for water looks like:

# INTDER ##########################
    3    3    3    0    0    3    0    0    0    1    0    0    0    1    1    0
   14
STRE     1    2
STRE     2    3
BEND     1    2    3
    1   1   1.000000000   2   1.000000000
    2   3   1.000000000
    3   1   1.000000000   2  -1.000000000
    0
      0.000000000000     1.431390244079     0.986041163966
      0.000000000000     0.000000000000    -0.124238450265
      0.000000000000    -1.431390244079     0.986041163966
DISP   4
    1       0.0050000000
    0
    2       0.0050000000
    0
    3       0.0050000000
    0
    1      -0.0050000000
    2      -0.0050000000
    3      -0.0100000000
    0

Force Constants

An input file for converting force constants from SICs to Cartesian coordinates, again for water, looks like:

# INTDER ##########################
    3    3    3    4    0    3    2    0    0    1    3    0    0    0    0    0
   14
STRE     1    2
STRE     2    3
BEND     1    2    3
    1   1   1.000000000   2   1.000000000
    2   3   1.000000000
    3   1   1.000000000   2  -1.000000000
    0
        0.0000000000        1.4313273344        0.9860352735
        0.0000000000        0.0000000000       -0.1242266321
        0.0000000000       -1.4313273344        0.9860352735
         H1          O16          H1
    1    1    0    0      8.360863692425
    2    1    0    0      0.364250381719
    2    2    0    0      0.705590041836
    3    3    0    0      8.562725561924
    0
    1    1    1    0    -41.638868371821
    2    1    1    0     -0.611029974345
    2    2    1    0     -0.447356783193
    2    2    2    0     -0.701565547377
    3    3    1    0    -41.484904978222
    3    3    2    0      0.392943158463
    0
    1    1    1    1    181.917347386091
    2    1    1    1     -0.292134838642
    2    2    1    1      0.372522604963
    2    2    2    1      1.034069182728
    2    2    2    2     -0.655831802100
    3    3    1    1    182.206178030730
    3    3    2    1     -1.233550191665
    3    3    2    2     -0.820459303061
    3    3    3    3    183.621273961541
    0

References

  • D. F. McIntosh, K. H. Michaelian, and M. R. Peterson. Can. J. Chem. Vol. 56, 1978
  • E. B. Wilson, Jr., J. C. Decius, and P. C. Cross. Molecular Vibrations, 1955.
  • W. D. Allen and A. G. Csaszar. J. Chem. Phys. 98, 1993.
  • A. L. L. East, W. D. Allen, and S. J. Klippenstein. J. Chem. Phys. 102, 1995

About

internal coordinate geometry and derivative transformations

Resources

Stars

1 star

Watchers

1 watching

Forks

Releases

Packages

Used by

Contributors

Languages