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Fix synthetic parity CI failures from transformers 5.13 upgrade - #390

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copilot/fix-ci-errors
Jul 8, 2026
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Fix synthetic parity CI failures from transformers 5.13 upgrade#390
justinchuby merged 3 commits into
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copilot/fix-ci-errors

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Copilot AI commented Jul 8, 2026

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Five tests/synthetic_parity_test.py cases (olmo3, deepseek_v3, deepseek_v2_2, longcat_flash, granitemoehybrid) broke after the transformers 5.13 upgrade, each from a distinct HF-side behavior change.

MLA head-count mismatch — deepseek_v2, deepseek_v3, longcat_flash

HF's SDPA path now applies repeat_kv whenever num_key_value_groups > 1. MLA reconstructs full-head K/V from a latent, so the tiny configs' num_key_value_heads=2 caused K/V to be duplicated (4→8 heads) against the 4-head query: RuntimeError: The size of tensor a (4) must match the size of tensor b (8).

  • Set num_key_value_heads == num_attention_heads for the MLA entries in tests/_test_configs.py (no-op for the mobius MLA path, which ignores num_key_value_heads).

granitemoehybrid — tests/synthetic_parity_test.py + granitemoehybrid.py

  • Legacy layer_types values mamba/attention are rejected by HF's validator; the test now emits linear_attention/full_attention, and the redundant _HF_EXTRA_CONFIG override forcing legacy names is removed.
  • HF renamed the routed-expert tensors; preprocess_weights now remaps them (identical layouts, names only), keeping legacy names for back-compat:
".block_sparse_moe.experts.gate_up_proj" -> ".block_sparse_moe.input_linear.weight"
".block_sparse_moe.experts.down_proj"    -> ".block_sparse_moe.output_linear.weight"
".block_sparse_moe.router.weight"        -> ".block_sparse_moe.gate.weight"

Without this remap the ONNX expert weights stayed random (cosine 0.996).

olmo3

Near-tie argmax with cosine=0.9999, max_abs_diff=0.0146 — a benign QK-norm + sliding/full-attention FP-accumulation difference. Added an olmo3: 0.02 atol override, consistent with existing entries like gemma3_text.

Copilot AI linked an issue Jul 8, 2026 that may be closed by this pull request
- MLA configs (deepseek_v2/v3, longcat_flash, deepseek_v2_moe): set
  num_key_value_heads == num_attention_heads so HF's repeat_kv in SDPA no
  longer inflates the full-head MLA K/V tensors.
- granitemoehybrid: use current HF layer-type names (linear_attention/
  full_attention) instead of the removed legacy mamba/attention values, and
  remap the renamed routed-expert weights (experts.gate_up_proj/down_proj,
  router.weight) in preprocess_weights.
- olmo3: add an atol override for its near-tie FP-accumulation divergence
  (cosine=0.9999, argmax near-tie).

Signed-off-by: copilot
@justinchuby
justinchuby marked this pull request as ready for review July 8, 2026 23:11
@justinchuby
justinchuby requested review from a team and Copilot July 8, 2026 23:11
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🏗️ Architecture Diff

Comparing 02537463244f7f

Model Sub-model Changes Status

No architecture changes detected.


Legend: ⚪ No change · 🔵 Minor (attrs/inits) · 🟡 Moderate (nodes added/removed) · 🔴 Major (interface changed)

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Performance Comparison

Comparing 02537463244f7f

Model Metric Baseline Current Delta
bert (feature-extraction) model_size_bytes 359 KB 359 KB +0.0%
bert (feature-extraction) num_nodes 60 60 +0.0%
falcon model_size_bytes 364 KB 364 KB +0.0%
falcon num_nodes 68 68 +0.0%
gemma2 model_size_bytes 428 KB 428 KB +0.0%
gemma2 num_nodes 107 107 +0.0%
gpt2 model_size_bytes 388 KB 388 KB +0.0%
gpt2 num_nodes 54 54 +0.0%
llama model_size_bytes 425 KB 425 KB +0.0%
llama num_nodes 62 62 +0.0%
llama (static-cache) model_size_bytes 425 KB 425 KB +0.0%
llama (static-cache) num_nodes 58 58 +0.0%
mamba (ssm-text-generation) model_size_bytes 296 KB 296 KB +0.0%
mamba (ssm-text-generation) num_nodes 98 98 +0.0%
phi3 model_size_bytes 421 KB 421 KB +0.0%
phi3 num_nodes 60 60 +0.0%
phi3 (static-cache) model_size_bytes 421 KB 421 KB +0.0%
phi3 (static-cache) num_nodes 56 56 +0.0%
qwen2 model_size_bytes 425 KB 425 KB +0.0%
qwen2 num_nodes 62 62 +0.0%
qwen2 (static-cache) model_size_bytes 425 KB 425 KB +0.0%
qwen2 (static-cache) num_nodes 58 58 +0.0%
qwen3_5_moe (hybrid-text-generation) model_size_bytes 506 KB 506 KB +0.0%
qwen3_5_moe (hybrid-text-generation) num_nodes 275 275 +0.0%
qwen3_5_text (hybrid-text-generation) model_size_bytes 458 KB 458 KB +0.0%
qwen3_5_text (hybrid-text-generation) num_nodes 129 129 +0.0%
qwen3_5_vl (hybrid-qwen-vl) model_size_bytes 977 KB 977 KB +0.0%
qwen3_5_vl (hybrid-qwen-vl) num_nodes 413 413 +0.0%
t5 (seq2seq) model_size_bytes 836 KB 836 KB +0.0%
t5 (seq2seq) num_nodes 166 166 +0.0%
whisper (speech-to-text) model_size_bytes 1008 KB 1008 KB +0.0%
whisper (speech-to-text) num_nodes 128 128 +0.0%

No performance regressions.

Move the full MLA kv-heads explanation to a single top-of-file note and
reference it concisely from each MLA config entry.

Signed-off-by: copilot
Copilot AI changed the title [WIP] Fix CI errors in synthetic parity tests Fix synthetic parity CI failures from transformers 5.13 upgrade Jul 8, 2026
Copilot AI requested a review from justinchuby July 8, 2026 23:14

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Pull request overview

Updates test configs and model-specific adapters to restore synthetic_parity_test.py stability after the transformers 5.13 upgrade, mainly by aligning HF config expectations (MLA KV heads; GraniteMoeHybrid layer-type naming) and loosening tolerance for a numerically sensitive model (Olmo3).

Changes:

  • Add an atol override for olmo3 to accommodate near-tie FP accumulation divergence while preserving functional parity.
  • Update DeepSeek/LongCat MLA tiny test configs so num_key_value_heads == num_attention_heads, preventing HF SDPA repeat_kv from inflating KV heads.
  • Adjust GraniteMoeHybrid test-side HF config layer-type translation and extend preprocess_weights() to remap GraniteMoeHybrid’s renamed routed-expert and router weight keys.

Reviewed changes

Copilot reviewed 3 out of 3 changed files in this pull request and generated no comments.

File Description
tests/synthetic_parity_test.py Adds olmo3 tolerance override; updates GraniteMoeHybrid HF layer-type mapping to current HF validator expectations.
tests/_test_configs.py Ensures MLA models use full-head K/V by setting num_key_value_heads to match num_attention_heads in tiny configs.
src/mobius/models/granitemoehybrid.py Updates preprocess_weights() to remap GraniteMoeHybrid routed-expert and router weight names across transformers versions.

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Codecov Report

✅ All modified and coverable lines are covered by tests.

📢 Thoughts on this report? Let us know!

@justinchuby
justinchuby merged commit da92170 into main Jul 8, 2026
18 of 21 checks passed
@justinchuby
justinchuby deleted the copilot/fix-ci-errors branch July 8, 2026 23:22
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Fix CI errors

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