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Retry with single core in geneformer - #41

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lazappi merged 1 commit into
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bugfix/no-ref/run-adjustments
Jan 21, 2025
Merged

Retry with single core in geneformer#41
lazappi merged 1 commit into
mainfrom
bugfix/no-ref/run-adjustments

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@lazappi

@lazappi lazappi commented Jan 21, 2025

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Describe your changes

Add geneformer script missing from #39

Checklist before requesting a review

  • I have performed a self-review of my code

  • Check the correct box. Does this PR contain:

    • Breaking changes
    • New functionality
    • Major changes
    • Minor changes
    • Bug fixes
  • Proposed changes are described in the CHANGELOG.md

  • CI Tests succeed and look good!

@lazappi
lazappi requested a review from rcannood January 21, 2025 12:24

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LGTM

@lazappi
lazappi merged commit 0211654 into main Jan 21, 2025
@lazappi
lazappi deleted the bugfix/no-ref/run-adjustments branch January 21, 2025 12:28
lazappi added a commit to HelloWorldLTY/task_batch_integration that referenced this pull request Jan 27, 2025
* origin/main: (28 commits)
  Adjust pyliger dependencies (openproblems-bio#43)
  Minor run adjustments (openproblems-bio#44)
  Fix reference in task description (openproblems-bio#45)
  Remove grouping bottleneck (openproblems-bio#42)
  Retry with single core in geneformer (openproblems-bio#41)
  Adjustments based on benchmark run (openproblems-bio#39)
  Update compute environment (openproblems-bio#35)
  Replace "+" in batch names for liger (openproblems-bio#37)
  Update common submodule to commit 62268aa  (openproblems-bio#38)
  Adjust features filter in scPRINT (openproblems-bio#36)
  minor tweaks to the cell cycle component (openproblems-bio#34)
  Update common submodule to commit a2e845 (openproblems-bio#33)
  Increase time resources (openproblems-bio#27)
  GPU adjustments (openproblems-bio#32)
  Add batch_hvg var column to solution (openproblems-bio#31)
  Add fine-tuned scGPT (openproblems-bio#17)
  Bump scIB to v1.1.7 (openproblems-bio#30)
  Pin scPRINT version (openproblems-bio#25)
  Increase UCE memory tag (openproblems-bio#24)
  Add exit codes helper file (openproblems-bio#26)
  ...
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2 participants