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openproblems-bio / task_ist_preprocessing Public

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Fixes - #195

#195

Merged

dariarom94 merged 55 commits into

mainopenproblems-bio/task_ist_preprocessing:mainfrom

fixesopenproblems-bio/task_ist_preprocessing:fixesCopy head branch name to clipboard

Jul 29, 2026

Conversation Commits55 (55)Checks Files changed

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Fixes#195
dariarom94 merged 55 commits into
mainfrom
fixes

update fastreseg to tacco

3a155be

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Test on: pull_request 12

build / List components to test

build / Test (bruker_cosmx, datasets/loaders, src/datasets/loaders/bruker_cosmx/config.vsh.yaml, src/data...

build / Test (vizgen_merscope, datasets/loaders, src/datasets/loaders/vizgen_merscope/config.vsh.yaml, sr...

build / Test (pciseq, methods_transcript_assignment, src/methods_transcript_assignment/pciseq/config.vsh....

build / Test (fastreseg, methods_transcript_assignment, src/methods_transcript_assignment/fastreseg/confi...

build / Test (segger, methods_transcript_assignment, src/methods_transcript_assignment/segger/config.vsh....

build / Test (binning, methods_segmentation, src/methods_segmentation/binning/config.vsh.yaml, src/method...

build / Test (watershed, methods_segmentation, src/methods_segmentation/watershed/config.vsh.yaml, src/me...

build / Test (stardist, methods_segmentation, src/methods_segmentation/stardist/config.vsh.yaml, src/meth...

build / Test (cellpose, methods_segmentation, src/methods_segmentation/cellpose/config.vsh.yaml, src/meth...

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