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Install shiny and shinyBS so srtsim can load #21

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Install shiny and shinyBS so srtsim can load #21

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c245962
install shiny and shinyBS for srtsim
rcannood Jul 28, 2026
dd8b391
update changelog
rcannood Jul 28, 2026
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3 changes: 3 additions & 0 deletions CHANGELOG.md
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Original file line number Diff line number Diff line change
@@ -1,6 +1,9 @@
# task_spatial_simulators dev

Bug fixes:
- `srtsim`: install `shiny` and `shinyBS`, without which `library(SRTsim)`
fails on a missing `httpuv`. The method produced no results at all in
`run_2026-07-11_18-00-02`.
- `run_benchmark`: raise `uns_length_cutoff` from 15 to 50, so that
`extract_uns_metadata` no longer drops the `metric_ids` of components that
emit more than 15 metrics. All 28 `ks_statistic_gene_cell` metrics were
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4 changes: 3 additions & 1 deletion src/methods/srtsim/config.vsh.yaml
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Expand Up @@ -21,7 +21,9 @@ engines:
image: openproblems/base_r:1
setup:
- type: r
cran: SRTsim
# shiny and shinyBS do not come along with SRTsim, which then fails to
# load with "there is no package called 'httpuv'"
cran: [SRTsim, shiny, shinyBS]

runners:
- type: executable
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