Repositories list

• Deep-Generative-modeling-Reveals-Multi-Phase-Regenerative-Cell-Dynamics-in-Arabidopsis-Roots

  Public
  Plant regeneration is a highly orchestrated process characterised by dynamic cellular reprogramming and lineage plasticity. This study presents an integrative d…

  Jupyter Notebook

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  Apache License 2.0

  •0•0•0•0•Updated Mar 15, 2026Mar 15, 2026

• vaRRI

  Public
  Visualize any RNA-RNA interaction

  Python

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  Apache License 2.0

  •0•0•3•0•Updated Mar 11, 2026Mar 11, 2026

• IntaRNA

  Public

  BackofenLab/IntaRNA’s past year of commit activity
  Efficient target prediction incorporating accessibility of interaction sites

  bioinformaticstoolstructure+ 2

  bioinformaticstoolstructurernainteraction

  C++

  •

  Other

  •28•51•30•2•Updated Feb 23, 2026Feb 23, 2026

• SV_diagnostic_tool

  Public
  Python

  •0•1•0•0•Updated Feb 19, 2026Feb 19, 2026

• ML_LS_resources

  Public

  BackofenLab/ML_LS_resources’s past year of commit activity
  ML in Life Science resources - hands-on lectures, hands-on exercise solutions

  Jupyter Notebook

  •3•3•0•0•Updated Jan 30, 2026Jan 30, 2026

• BioinformaticsI-pages

  Public
  JavaScript

  •1•0•0•0•Updated Jan 22, 2026Jan 22, 2026

• De-novo-design-of-antibacterial-cell-penetrating-peptides-using-structure-aware-generative-modelling

  Public

  BackofenLab/De-novo-design-of-antibacterial-cell-penetrating-peptides-using-structure-aware-generative-modelling’s past year of commit activity
  model to design cell penetrating proteins

  Python

  •

  MIT License

  •0•0•0•0•Updated Jan 4, 2026Jan 4, 2026

• An-AI-Guided-Liver-Metastasis-Atlas-Links-Tumor-Invasion-Programs-to-Invasive-Trophoblast-Signatures

  Public
  Python

  •0•0•0•0•Updated Dec 22, 2025Dec 22, 2025

• AxoWise

  Public
  An integrated graph system of biological entities, functional terms, and publications.

  sqlneo4jproteins+ 5

  sqlneo4jproteinsgraph-databasegephinetwork-analysiscypherpathway

  Vue

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  Apache License 2.0

  •1•6•16•0•Updated Sep 12, 2025Sep 12, 2025

• V_RNA-pages

  Public
  JavaScript

  •0•0•0•0•Updated Jul 3, 2025Jul 3, 2025

• BioinformaticsII-pages

  Public
  JavaScript

  •0•0•0•0•Updated May 6, 2025May 6, 2025

• galaxy-visualizations

  Public
  JavaScript

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  Other

  •16•0•0•0•Updated Apr 27, 2025Apr 27, 2025

• CRISPRtracrRNA

  Public
  Python

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  MIT License

  •4•10•5•1•Updated Mar 6, 2025Mar 6, 2025

• HVSeeker

  Public
  Python

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  MIT License

  •0•2•2•0•Updated Mar 6, 2025Mar 6, 2025

• BrainDead

  Public
  BrainDead - RNA classification via accessible k-mers

  Jupyter Notebook

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  GNU General Public License v3.0

  •1•0•0•0•Updated Jan 24, 2025Jan 24, 2025

• CRISPRidentify

  Public
  Python

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  MIT License

  •7•31•5•1•Updated Dec 28, 2024Dec 28, 2024

• CRISPRcasIdentifier

  Public
  Machine learning for accurate identification and classification of CRISPR-Cas systems

  machine-learningcrispr-cas-systemscas-proteins+ 1

  machine-learningcrispr-cas-systemscas-proteinscrispr-subtypes

  Python

  •

  GNU General Public License v3.0

  •6•23•0•0•Updated Dec 20, 2024Dec 20, 2024

• Optimierung-pages

  Public
  JavaScript

  •0•0•0•0•Updated Nov 25, 2024Nov 25, 2024

• Long_Range_RNA_Interactions

  Public
  Genomic long range RNA-RNA interactions in flaviviruses

  Python

  •1•0•1•0•Updated Jul 15, 2024Jul 15, 2024

• B2_01_hidden_markov_models

  Public template
  Python

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  GNU General Public License v3.0

  •0•0•0•0•Updated Apr 30, 2024Apr 30, 2024

• B2_10_intro_mapping

  Public template
  Python

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  GNU General Public License v3.0

  •0•0•0•0•Updated Apr 16, 2024Apr 16, 2024

• B2_06_BLAST

  Public template
  Python

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  GNU General Public License v3.0

  •0•0•0•0•Updated Apr 16, 2024Apr 16, 2024

• B2_00_intro_to_classroom

  Public template
  Python

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  GNU General Public License v3.0

  •0•0•0•0•Updated Apr 16, 2024Apr 16, 2024

• MutARNA

  Public
  Jupyter Notebook

  •3•2•0•0•Updated Mar 21, 2024Mar 21, 2024

• RBPBench

  Public
  Python

  •0•1•0•0•Updated Mar 20, 2024Mar 20, 2024

• LocARNA_consensus_constraint

  Public
  R

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  MIT License

  •0•0•0•0•Updated Mar 4, 2024Mar 4, 2024

• RNA-Playground

  Public
  Visualize the inner workings of RNA bioinformatics algorithms for structure prediction, interaction prediction and sequence alignment.

  bioinformaticsalgorithmteaching+ 4

  bioinformaticsalgorithmteachingalignmentrnanussinovstructure-prediction

  JavaScript

  •15•40•1•0•Updated Feb 28, 2024Feb 28, 2024

• Cherri

  Public
  Python

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  GNU General Public License v3.0

  •0•0•17•3•Updated Feb 26, 2024Feb 26, 2024

• LatPack

  Public
  Collection of tools related to modelling and folding simulations of lattice-protein models with arbitrary energy functions

  C++

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  MIT License

  •1•1•0•0•Updated Feb 7, 2024Feb 7, 2024

• B1_10_tree-UPGMA

  Public template
  Python

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  GNU General Public License v3.0

  •0•0•0•0•Updated Jan 25, 2024Jan 25, 2024