Zuber lab

All

12 repositories

minigene-process-nf
Public
Process minigene screening data
Python
•
MIT License
•0•0•0•0•Updated Feb 12, 2026Feb 12, 2026
vbcf-nf
Public
Retrieve Files from VBCF Sequencing Facility
nextflow bioinformatics-pipeline
nextflow bioinformatics-pipeline
Nextflow
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MIT License
•1•1•0•0•Updated Jan 27, 2026Jan 27, 2026
crispr-mageck-nf
Public
Analyze CRISPR and shRNA functional genetic screening data
bioinformatics nextflow singularity
bioinformatics nextflow singularity crispr-cas9 shrna
R
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MIT License
•5•12•1•0•Updated Dec 1, 2025Dec 1, 2025
dual-crispr-process-nf
Public
Process dual-sgRNA CRISPR functional genetic screening data.
Nextflow
•
MIT License
•2•0•0•0•Updated Oct 21, 2025Oct 21, 2025
crispr-process-nf
Public
Process CRISPR and shRNA functional genetic screening data
bioinformatics nextflow singularity
bioinformatics nextflow singularity crispr-cas9 shrna
Nextflow
•
MIT License
•1•3•1•0•Updated Oct 7, 2025Oct 7, 2025
Containers
Public
Repository of Makefiles for Docker containers
Dockerfile
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GNU Affero General Public License v3.0
•1•0•0•0•Updated Apr 13, 2020Apr 13, 2020
crisprepo-shiny
Public
Shiny frontend for browsing screening data
R
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GNU Affero General Public License v3.0
•0•1•0•0•Updated Jul 6, 2018Jul 6, 2018
crispr-nf
Public
Pre-processing of multiplexed CRISPR / shRNA Screens (deprecated)
nextflow bioinformatics-pipeline crispr-analysis
nextflow bioinformatics-pipeline crispr-analysis
Nextflow
•
MIT License
•2•2•1•0•Updated Apr 23, 2018Apr 23, 2018
mageck-nf
Public
Statistical Analysis of multiplexed CRISPR / shRNA Screens using MAGeCK (deprecated)
docker nextflow singularity
docker nextflow singularity bioinformatics-pipeline crispr-analysis mageck
R
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MIT License
•0•3•0•0•Updated Apr 23, 2018Apr 23, 2018
guidemapper-nf
Public
Annotate CRISPR and shRNA screening libraries
nextflow singularity bioinformatics-pipeline
nextflow singularity bioinformatics-pipeline crispr
R
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MIT License
•0•1•0•0•Updated Apr 11, 2018Apr 11, 2018
sra-nf
Public
Download Raw Reads from SRA Archive
nextflow bioinformatics-pipeline sratoolkit
nextflow bioinformatics-pipeline sratoolkit
Nextflow
•
MIT License
•0•0•0•0•Updated Feb 8, 2018Feb 8, 2018
palantir-shiny
Public
Shiny frontend for browsing and gene expression and screening data
docker-image screening shiny-apps
docker-image screening shiny-apps rna-seq-analysis
R
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GNU Affero General Public License v3.0
•0•0•1•0•Updated Dec 29, 2017Dec 29, 2017