Repositories list

• MismatchResolveDX

  Public
  This pipeline is used for the analysis of the MismatchResolveDx (previously the MultiMMR) sequencing panel (including shallow WGS and targeted sequencing of con…

  Perl

  •1•0•0•0•Updated Mar 19, 2026Mar 19, 2026

• tigerdb

  Public
  TIGERdb: T-Cell and ImmunoGlobulin Epitope Receptor DataBase

  TypeScript

  •0•1•0•1•Updated Mar 12, 2026Mar 12, 2026

• matchminer-api

  Public
  A platform for matching patient-specific genomic profiles to precision cancer medicine clinical trials

  Python

  •13•0•0•1•Updated Feb 27, 2026Feb 27, 2026

• ctims

  Public
  CTIMS project

  CSS

  •

  Apache License 2.0

  •10•3•8•5•Updated Feb 26, 2026Feb 26, 2026

• pipeline-suite

  Public
  Collection of pipelines for NGS analysis along with utilities

  Perl

  •3•4•0•0•Updated Feb 13, 2026Feb 13, 2026

• ctims-matchminer-engine

  Public
  Python

  •

  Apache License 2.0

  •1•0•0•0•Updated Feb 5, 2026Feb 5, 2026

• TRI_LRWGS_glioma

  Public
  Jupyter Notebook

  •1•0•0•0•Updated Jan 12, 2026Jan 12, 2026

• EarlyDetectionHBOC

  Public
  R

  •0•0•0•0•Updated Dec 4, 2025Dec 4, 2025

• HEARTBEATOV_wgs

  Public
  R

  •0•0•0•0•Updated Nov 27, 2025Nov 27, 2025

• ped_CapTCRseq

  Public
  Dynamics of peripheral T-cell repertoire in pediatric cancer patients over the course of chemoradiation

  ngstcr-repertoirepediatric-cancer+ 1

  ngstcr-repertoirepediatric-cancermixcr

  Jupyter Notebook

  •0•1•0•0•Updated Nov 26, 2025Nov 26, 2025

• ctims-pages

  Public
  CTIMS Github Pages

  0•0•0•0•Updated Nov 19, 2025Nov 19, 2025

• INSPIRE_TCR

  Public
  Pan-cancer assessment of the tumour and systemic T-cell receptor repertoire dynamics in patients treated with pembrolizumab

  R

  •0•2•0•0•Updated Nov 5, 2025Nov 5, 2025

• cfWGS-MM-MRD

  Public
  This directory contains scripts for "Cell-free DNA Whole Genome Sequencing for Non-Invasive MRD Detection in Multiple Myeloma" by Abelman et al., 2025

  R

  •1•0•0•0•Updated Oct 20, 2025Oct 20, 2025

• CompareFragmentSize

  Public
  Compare fragment size of variant- and reference-allele containing reads in a BAM file

  R

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Oct 6, 2025Oct 6, 2025

• crescent

  Public
  The CanceR Single Cell ExpressioN Toolkit one-line-command applications.

  dockerweb-servertoolkit+ 5

  dockerweb-servertoolkitcancerdatabasesportalsingle-cell-rna-seqsingle-cell-analysis

  R

  •

  GNU General Public License v3.0

  •4•8•1•0•Updated May 14, 2025May 14, 2025

• MEDIPIPE

  Public
  HTML

  •

  MIT License

  •5•12•1•0•Updated May 13, 2025May 13, 2025

• SpondyloArthritis_TCR

  Public
  R

  •0•0•0•0•Updated May 5, 2025May 5, 2025

• wm-cfwgs-mrd

  Public
  This repository contains all R code and figure generation workflows used in Chow S., Abelman D. et al. (2025), Measurement of Bone Marrow Tumour Burden and Mini…

  R

  •

  MIT License

  •0•0•0•0•Updated May 5, 2025May 5, 2025

• oncographer

  Public
  OncoGrapher: standardized, graph-based, clinical data abstraction tool leveraging the MOHCCN data standard

  TypeScript

  •1•5•0•0•Updated Apr 17, 2025Apr 17, 2025

• IRIS_TCR

  Public
  R

  •0•0•0•0•Updated Mar 21, 2025Mar 21, 2025

• IOKIN_TCR-and-ctDNA

  Public
  R

  •0•1•0•0•Updated Mar 16, 2025Mar 16, 2025

• COMBAT

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Feb 14, 2025Feb 14, 2025

• MetaMutationalSigs

  Public
  https://hub.docker.com/r/pp535/metamutationalsigs

  HTML

  •2•0•0•0•Updated Feb 10, 2025Feb 10, 2025

• hbc

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Feb 3, 2025Feb 3, 2025

• cbioportal-docs

  Public
  0•0•0•0•Updated Jan 24, 2025Jan 24, 2025

• CapTCR-TIL-Tracking

  Public
  R

  •0•0•0•0•Updated Jan 17, 2025Jan 17, 2025

• cbioportal

  Public
  cBioPortal for Cancer Genomics

  dockerfilestravis-ci-configurationpython-wrapper+ 4

  dockerfilestravis-ci-configurationpython-wrappermybatisspring-mvcrestful-webserviceskeycloak-adapter

  Java

  •

  GNU Affero General Public License v3.0

  •845•0•0•12•Updated Jan 14, 2025Jan 14, 2025

• HCC_cfMeDIP

  Public
  R

  •0•1•0•0•Updated Sep 30, 2024Sep 30, 2024

• fragmentomics

  Public
  Collection of fragmentomic analysis scripts

  R

  •3•13•0•0•Updated Jul 3, 2024Jul 3, 2024

• TGL49_CHARM_LFS_Fragmentomics

  Public
  R

  •2•1•0•0•Updated Jul 3, 2024Jul 3, 2024