Merge dash bio utils#593

Merged

HammadTheOne merged 105 commits into

merge-dash-bio-utils

Jan 16, 2022

Commits on May 15, 2019

Add initial README.
Shammamah Hossain
committed
Add all setup info.
Shammamah Hossain
committed
Add all utils.
Shammamah Hossain
committed
Update README.
Shammamah Hossain
committed
Add license and include README.
Shammamah Hossain
committed
Add description to setup.
Shammamah Hossain
committed
Fix version number.
Shammamah Hossain
committed
Change to rc version.
Shammamah Hossain
committed

Commits on May 16, 2019

Add Python files to package and update rc version.
Shammamah Hossain
committed
Apply suggestions from code review

Shammamah Hossain
and
mkcor
authored
Remove references to dash_bio.utils.
Shammamah Hossain
committed

Commits on May 21, 2019

Fix wrong-import-order in dash_bio/utils/

mkcor
authored and
Shammamah Hossain
committed
Fix pylint errors for protein_reader.
Shammamah Hossain
committed
Fix all files to be compliant with pylint guidelines.
Shammamah Hossain
committed
Add pylintrc file.
Shammamah Hossain
committed
Customize pylintrc file.
Shammamah Hossain
committed
Remove init hook.
Shammamah Hossain
committed
Raise exception for non-dataframe input.
Shammamah Hossain
committed
Update README.
Shammamah Hossain
committed

Commits on May 22, 2019

Add contributing guidelines.
Shammamah Hossain
committed
Update README.
Shammamah Hossain
committed
Update to first version of package.
Shammamah Hossain
committed
Merge pull request #1 from plotly/pypi-release
Shammamah Hossain
authored

Commits on May 24, 2019

Update CONTRIBUTING.md
Shammamah Hossain
authored
Update CONTRIBUTING.md
Shammamah Hossain
authored

Commits on May 28, 2019

Add chem structure reader.
Shammamah Hossain
committed
Update version in setup.py.
Shammamah Hossain
committed

Commits on May 29, 2019

Add periodictable to setup install requirements.
Shammamah Hossain
committed
Combine both exceptions into one.
Shammamah Hossain
committed
Update rc version in requirements.
Shammamah Hossain
committed
Fix pylint errors, add try-catch blocks, and change variable name.
Shammamah Hossain
committed
Update rc version.
Shammamah Hossain
committed
Update chem_structure_reader.py
Shammamah Hossain
authored
Expose bond distance within read_structure.
Shammamah Hossain
committed
Make distance computation function private.
Shammamah Hossain
committed
Merge branch 'pypi-release' of https://github.com/plotly/dash-bio-utils into pypi-release
Shammamah Hossain
committed
Fix alphabetical ordering of setup install requirements.
Shammamah Hossain
committed
Change rounding.
Shammamah Hossain
committed
Update CHANGELOG.
Shammamah Hossain
committed
Update to release version.
Shammamah Hossain
committed
Merge pull request #2 from plotly/pypi-release
Shammamah Hossain
authored
Update CHANGELOG.md
Shammamah Hossain
authored

Commits on Jun 3, 2019

Add CHANGELOG entry
mkcor
committed
Update dash_bio_utils/chem_structure_reader.py

mkcor
and
Shammamah Hossain
authored
Match wording in consecutive docstrings
mkcor
committed

Commits on Jun 5, 2019

Commits on Jun 7, 2019

Use io instead of os library to generate long description for PyPI.
Shammamah Hossain
committed

Commits on Jun 9, 2019

Commits on Jun 10, 2019

Commits on Jun 11, 2019

Merge branch 'master' into mkcor-default-params
mkcor
committed
Rename parameter as a directive

mkcor
and
Shammamah Hossain
authored
Adapt function code to directive parameter
mkcor
committed

Commits on Jun 12, 2019

Commits on Jun 17, 2019

Merge pull request #3 from plotly/mkcor-default-params
mkcor
authored

Commits on Jun 20, 2019

Merge branch 'master' into mkcor-start-tests
mkcor
committed

Commits on Jun 21, 2019

Commits on Jul 1, 2019

Commits on Aug 10, 2019

Commits on Aug 13, 2019

Get sample data from online file
mkcor
committed

Commits on Aug 23, 2019

Merge pull request #6 from plotly/mkcor-start-tests
mkcor
authored

Commits on Jun 10, 2020

Commits on Feb 9, 2021

Update setup.py with hardcoded package name
xhlulu
committed

Commits on Feb 11, 2021

Remove filepath and package from setup.py
xhlulu
committed
Merge pull request #13 from plotly/update-pypi
Xing Han Lu
authored

Commits on Feb 16, 2021

NGL Parser and 0.0.6 release (#14)
HammadTheOne
authored

Commits on Oct 5, 2021

Updating PDB parser (#15)
HammadTheOne
authored

Commits on Oct 6, 2021

mmCIF parser (#17)

HammadTheOne
and
nickmelnikov82
authored

Commits on Oct 27, 2021

fix: pdb parser refactor (#18)

olayway
and
Aleksandra Rubaj
authored
Updating CHANGELOG
HammadTheOne
committed
0.0.8 patch (#19)
HammadTheOne
authored
Updating changelog
HammadTheOne
committed

Commits on Nov 5, 2021

Add 'dash_bio/utils/' from commit '3c7e5795959143eaabacd53775d11e3c799afec2'
nickmelnikov82
committed

Commits on Nov 9, 2021

Commits on Nov 18, 2021

Merge branch 'master' into merge-dash-bio-utils. Changed circleci config.
nickmelnikov82
committed

Commits on Nov 22, 2021

Commits on Jan 10, 2022

Commits on Jan 14, 2022

Fix sequence-viewer test.
nickmelnikov82
committed