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feat(xenium): import onboard secondary analysis (clustering/PCA/UMAP/diffexp) into the table
Test
#937:
Pull request
#405
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Tomatokeftes
3m 54s
Tomatokeftes:feat/xenium-cells-analysis
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Adopt the current scverse cookiecutter template
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#935:
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3m 21s
feat/adopt-scverse-template
feat/adopt-scverse-template
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Support nf-core/mcmicro output in the mcmicro reader
Test
#934:
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adamjtaylor
5m 0s
mc2-center:feat/mcmicro-nfcore-support
mc2-center:feat/mcmicro-nfcore-support
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xenium: use cell_id name for shapes index (#399)
Test
#933:
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3m 40s
v0.7.1
v0.7.1
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feat: rewrite the CosMx reader (stitching, multimodal, co-registration)
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feat: rewrite the CosMx reader (stitching, multimodal, co-registration)
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feat: rewrite the CosMx reader (stitching, multimodal, co-registration)
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feat: rewrite the CosMx reader (stitching, multimodal, co-registration)
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feat: rewrite the CosMx reader (stitching, multimodal, co-registration)
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2m 23s
timtreis:feat/cosmx-reader-rewrite
timtreis:feat/cosmx-reader-rewrite
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feat(xenium): import onboard secondary analysis (clustering/PCA/UMAP/diffexp) into the table
Test
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Tomatokeftes:feat/xenium-cells-analysis
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feat(xenium): import onboard secondary analysis (clustering/PCA/UMAP/diffexp) into the table
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Tomatokeftes:feat/xenium-cells-analysis
Tomatokeftes:feat/xenium-cells-analysis
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feat(xenium): import onboard secondary analysis (clustering/PCA/UMAP/diffexp) into the table
Test
#925:
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2m 56s
Tomatokeftes:feat/xenium-cells-analysis
Tomatokeftes:feat/xenium-cells-analysis
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ci: bump codecov-action to v6 and fail CI on upload error
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#924:
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13m 34s
fix/codecov-action-v6-signature
fix/codecov-action-v6-signature
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Testing cleanup
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Darlokt:testing-cleanup
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xenium: use cell_id name for shapes index (#399)
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main
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xenium: use cell_id name for shapes index
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fix/xenium-cell-id-index-name-for-shapes
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Pad images with 0 on right and bottom, if images differ in dimensions…
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#918:
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3m 20s
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3m 20s
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Pad images with 0 on right and bottom, if images differ in dimensions
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3m 52s
MSHelm:fix/macsima_pad_images_of_differing_dimensions
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Pad images with 0 on right and bottom, if images differ in dimensions
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MSHelm:fix/macsima_pad_images_of_differing_dimensions
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View #371
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Pad images with 0 on right and bottom, if images differ in dimensions
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MACSIMA parse subfolders only when explicitly requested (#379)
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3m 39s
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main
3m 39s
View workflow file
MACSIMA parse subfolders only when explicitly requested
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4m 45s
MSHelm:feature/macsima_parse_subfolders_only_when_explicitly_requested
MSHelm:feature/macsima_parse_subfolders_only_when_explicitly_requested
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