Segmentation fault for BAM files

[moldach]

I'm getting errors on both my C. elegans and H. sapiens .bam files:

[moldach@cedar5 HG03583]$ salloc --time=0:10:0 --mem=100000
[moldach@cedar5 HG03583]$ module load htslib

[moldach@cdr861 HG03583]$ /home/moldach/bin/falco-0.2.1/bin/falco alignment/HG03583_S1_L001.bam
[limitst]       using file /home/moldach/bin/falco-0.2.1/Configuration/limits.txt
[Sun May  3 17:59:40 2020] Started reading file alignment/HG03583_S1_L001.bam
[Sun May  3 17:59:40 2020] reading file as bam format
Segmentation fault (core dumped)

Any idea what the issue is here?

[msnyder424]

I had the same issue. See issue #12 and #26. Mine was completely resolved after running conda update falco. You could also build the most recent version from source, of course.

[andrewdavidsmith]

Closing this based on @msnyder424 comment.