Reference model performance results and refactoring/renaming in `summary.vsel()` and `plot.vsel()`#471

Merged

fweber144 merged 38 commits into

stan-dev:masterfrom

fweber144:perf_ref_etc

Nov 7, 2023

Commits on Nov 7, 2023

`plot.vsel()`: Minor efficiency enhancement concerning the two `.tabulate_stats()` calls in lines
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`plot.vsel()`: Simplify the two `.tabulate_stats()` calls.
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`plot.vsel()`: Clean-up.
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`summary.vsel()`: Simplify the two `.tabulate_stats()` calls.
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`summary.vsel()`: Avoid definition of `tab` (not used any further).
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`summary.vsel()`: Remove `cv_suffix` (the CV method is already printed
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`summary.vsel()`: Simplify the code for `suffix`.
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`summary.vsel()`: Simplify further code for `suffix`.
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`summary.vsel()`: Rename object `suffix` to `colnms_clean` (used as
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`summary.vsel()`: Clean-up the code for constructing `arr`.
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`summary.vsel()`: Rename `arr` to `perf_sub`.
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`summary.vsel()`: Move the code for the predictor ranking(s) upwards
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`summary.vsel()`: Enhance some comments.
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`summary.vsel()`: Move the initialization of the submodel performance output table upwards
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`summary.vsel()`: Rename `qty` to `colnms_old`.
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`summary.vsel()`: Simplify the code for `colnms_old`.
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`summary.vsel()`: Rename the `stats_table` that was reduced to the submodel rows to `stats_table_sub`.
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`summary.vsel()`: Minor efficiency improvement (`stats_table_sub` is the long
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`summary.vsel()`: Post-process the reference model performance results as well
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`summary.vsel()`: Don't treat `stats` of length 1 and > 1 differently
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`summary.vsel()`: Clean-up code related to `type_dot`.
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`summary.vsel()`: Rename `<vselsummary_object>$selection` to `<vselsummary_object>$perf_sub`
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`summary.vsel()`: Replace `NA_character_` at size `0` by `"(Intercept)"`
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`plot.vsel()`: Replace `NA_character_` at size `0` by `"(Intercept)"`
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`summary.vsel()`: Rename column `solution_terms` to `ranking_fulldata`
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`summary.vsel()`: Rename `stats_table` to `stats_table_all`.
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`plot.vsel()`: Rename `stats_table` to `stats_table_all`.
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`summary.vsel()`: Make the reference model performance results accessible.
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Tests: Adapt to the recent changes in `summary.vsel()` and `plot.vsel()`.
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Add helper function `performances()` for accessing `perf_ref` and `perf_sub` elements
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`print.vsel()`: Minor cleaning.
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Tests: Add unit tests for the new function `performances()`.
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Print the reference model performance results if `deltas` is `FALSE`.
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Print the reference model performance results always (not just if `deltas` is `FALSE`)
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Docs: Enhance the docs for `...` in `print.vselsummary()`.
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Latent vignette: Need to adapt to the renaming of `<vselsummary_object>$selection`
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Add `NEWS.md` entries.
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Docs: Minor enhancements for `summary.vsel()`.
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