We read every piece of feedback, and take your input very seriously.
To see all available qualifiers, see our documentation.
1 parent 480cb6f commit 52de103Copy full SHA for 52de103
workflows/utilities/wf_ivar_consensus.wdl
@@ -141,7 +141,7 @@ workflow ivar_consensus {
141
String ivar_variant_proportion_intermediate = variant_call.variant_proportion_intermediate
142
String ivar_variant_version = variant_call.ivar_version
143
# assembly outputs
144
- String assembly_method_nonflu = "~{bwa.bwa_version}; ~{primer_trim.ivar_version}"
+ String assembly_method_nonflu = "~{bwa.bwa_version}~{if defined(primer_trim.ivar_version) then '; Primer Trim: ' + primer_trim.ivar_version else ''}; Consensus: ~{consensus.ivar_version}"
145
File assembly_fasta = consensus.consensus_seq
146
String ivar_version_consensus = consensus.ivar_version
147
String samtools_version_consensus = consensus.samtools_version
0 commit comments