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[iVar Version] Include iVar Consensus Version in assembly_method (#1011)
* select first to assembly_method_nonflu * updated output method * unnecessary select_first
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workflows/utilities/wf_ivar_consensus.wdl

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@@ -141,7 +141,7 @@ workflow ivar_consensus {
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String ivar_variant_proportion_intermediate = variant_call.variant_proportion_intermediate
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String ivar_variant_version = variant_call.ivar_version
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# assembly outputs
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String assembly_method_nonflu = "~{bwa.bwa_version}; ~{primer_trim.ivar_version}"
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String assembly_method_nonflu = "~{bwa.bwa_version}~{if defined(primer_trim.ivar_version) then '; Primer Trim: ' + primer_trim.ivar_version else ''}; Consensus: ~{consensus.ivar_version}"
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File assembly_fasta = consensus.consensus_seq
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String ivar_version_consensus = consensus.ivar_version
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String samtools_version_consensus = consensus.samtools_version

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