TCR embedding expressivity evaluation framework.
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Jan 1, 2025 - Python
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computational-immunology
Here are 10 public repositories matching this topic...
About me (Soumya Banerjee)
finance data-science machine-learning statistics financial computational-biology immunology mortgage statistical computational-immunology artificial-immune-system deriving-insights clinical-informatics healthcare-domains neelsoumya soumyabanerjee kalyanibanerjee tarakeswarbanerjee
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Oct 2, 2025
Curriculum Vitae
data-science machine-learning computational-biology computational-immunology clinical-information-system clinical-data-warehouse clinical-informatics computational-immunogenomics
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Apr 24, 2026 - TeX
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Apr 20, 2017 - Jupyter Notebook
A Mathematical and Computational Model for simulating immune regulation of Type 1 Diabetes.
data-science parameter-estimation ordinary-differential-equations computational-science mathematical-modelling computational-immunology immune-system
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Sep 17, 2025 - Python
Computational pipeline for antigen-specific tolerogenic vaccine design—predicting MHC-II epitopes, scoring tolerance potential, and assembling candidate multi-epitope mRNA constructs (starting with ITP).
bioinformatics itp immunoinformatics computational-immunology epitope-prediction autoimmune-disease tolerogenic-vaccine epitope-design immune-tolerance immune-thrombocytopenia
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Apr 20, 2026 - Jupyter Notebook
A multi-language bioinformatics pipeline (Bash, R, Python) for single-cell RNA-seq analysis of the Melanoma tumor microenvironment. Identifies CD8+ T-cell exhaustion signatures and statistically validates them as predictive biomarkers for Immune Checkpoint Blockade (ICB) therapy response.
bioinformatics scrna-seq biomarker-discovery computational-immunology melanoma seurat t-cell-exhaustion
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Mar 15, 2026 - Python
End-to-end clinical shotgun metagenomic pipeline investigating microbial triggers (NOD2/TLR4) of metabolic inflammation, disproving barrier failure and supporting the Host Autonomy model in Type 2 Diabetes.
systems-biology microbiome computational-immunology r-stats humann type-2-diabetes metagenomics-bioinformatics host-microbe-crosstalk
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Apr 20, 2026 - R
TCR-Epitope-MHC Binding Prediction with Metric Learning
deep-learning drug-discovery computational-immunology transformer-architecture tcr-pmhc-binding cross-attention-mechanism dual-encoder-architecture
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Oct 31, 2025 - Jupyter Notebook
MacroImmunet is a modular, event-driven research demo for agent-based simulation of immune responses at the tissue / organ scale. Rather than reproducing full single-cell biophysics, it explores how immune behavior emerges from structured coordination layers acting over spatial fields.
systems-biology plugin-architecture computational-immunology agent-based-model multi-agent-system immune-system research-demo biological-simulatiom
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Apr 6, 2026 - Python
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