A Reproducible Workflow for Structural and Functional Connectome Ensemble Learning

White matter tractography clustering and more...

A hands-free DTI, DKI, FBI and FBWM preprocessing pipeline. Information on algorithms and preprocessing steps are available at https://www.biorxiv.org/content/10.1101/2021.10.20.465189v1 A video tutorial on PyDesigner and its usage is now available at https://www.youtube.com/watch?v=mChQFuQqX3k

ElikoPy is Python library aiming at easing the processing of diffusion imaging for microstructural analysis.

Reconstruction of preprocessed q-space images (dMRI)

Tractography learning

A flexible framework for volume-wise artifact estimation and correction across multiple 4D neuroimaging modalities (diffusion MRI, functional MRI, and PET)

An end-to-end python package for intravoxel incoherent motion (IVIM) analysis of diffusion MRI data

This code is used to optimize single or multiple shell uniform sampling schemes in diffusion MRI via continuous optimization and discrete optimization.

Code repository for EPINR - EPI Distortion Correction without Opposite Phase Encodings with Unsupervised INR-Based Deformable Registration

Record all learned knowledge of MRI

DDSeg-PyTorch: PyTorch Implementation of DDSeg for Diffusion MRI Segmentation (MATLAB-Aligned)

Diffusion Weighted Image Simulator

experiments with neuroimaging pipelines that use noddi and tbss

White Matter Analysis Pipeline (WMAP)

Analysis of the structural connectivity of diffusion data

Python toolbox that aims the uncertainty quantification in diffusion-MRI tractography.

This repository contains the code and documentation for the Brainhack School project on exploring the structure-function coupling and segregation analysis in video-watching electroencephalography (EEG) data. The project aims to investigate how the electrophysiological activity during video-watching is related to the underlying anatomical structure

Codes of my master thesis

Scripts to process dMRI volumes and create cortical streamlines in rat data.