A full-featured Shiny app for GWAS analysis, SNP annotation, pathway enrichment, and machine learning — optimized for HPC via Singularity.

Parses GenBank files from the NCBI nucleotide database using accession number and email address associated with NCBI account. Is capable of outputting a .txt file containing basic sequence information, source, CDS, and gene feature dictionaries as well as generate a linear gene map visualizing all of the aforementioned information.

This project analyzes X chromosome data to study the association between red and green gene configurations and color blindness. It aligns sequencing reads to the reference sequence, maps them to gene exons, and determines the most likely configuration causing color blindness.