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infectious-diseases

Here are 15 public repositories matching this topic...

jimmyliu1326 / SamnSero_Nextflow

Bacterial Genomics Workflow for Infectious Disease Diagnostics and Surveillance

bioinformatics nextflow microbial-genomics infectious-diseases bacterial-typing

Updated Oct 16, 2025
HTML

xingrucz / fudab.github.io

Official website @ Github with content including COVID-19.

infectious-diseases sir-model infectious-disease-models covid-19

Updated Mar 22, 2021
HTML

stone-zeng / china-infectious-diseases

全国法定传染病疫情概况

data analytics healthcare infectious-diseases covid-19

Updated Mar 19, 2026
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kingaa / clim-dis

Materials for ICTP Workshop on Mathematical Models of Climate Variability, Environmental Change and Infectious Diseases

dynamical-systems mathematical-modelling stochastic-processes infectious-diseases mathematical-models pomp ictp-workshop climate-variability

Updated Apr 15, 2020
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JRaviLab / jravilab.github.io

Janani Ravi's Research Group

computational-biology drug-repurposing comparative-genomics molecular-evolution phylogeny infectious-diseases research-group host-pathogen

Updated Mar 17, 2026
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vaofford / Bio-Deago

bioinformatics research genomics pathogen sequencing next-generation-sequencing bioinformatics-pipeline global-health infectious-diseases

Updated Sep 2, 2019
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bquilty25 / outbreaks-public

r virus rmarkdown epidemiology modelling imperial-college infectious-diseases maximum-likelihood-estimation compartmental-models

Updated Apr 24, 2018
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davidnarganes / causal-agents

This repository will contain the code for generating (Java) and analysing (R programming language) a simple multi-Agent Based Model (mABM) of patients in a 2D continuous space. The idea is to simulate (i) causal diagrams for interference, (ii) ABMs, and the contagion of a disease thought a social network.

social-network abm agent-based-modeling causal-inference interference infectious-diseases contagion agent-based-simulation

Updated Aug 8, 2018
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RiteshSingh / poolsize

Optimal Testing Pool Size Calculator - For pool testing of infectious diseases including COVID-19

disease-surveillance infectious-diseases infectious diagnostic-tests disease-detection covid-19 covid-virus covid covid19 covid-19-india

Updated Oct 28, 2021
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blab / ncov-usa-mig

Analysis of SARS-CoV-2 Surveillance Sequences Across the United States

epidemiology virology infectious-diseases

Updated Mar 29, 2026
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arnold-c / SISMID_2021

epidemiology mathematical-biology infectious-diseases infectious-disease-models

Updated Apr 18, 2026
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choisy / DMo2019

Disease Modeling Workshop, UNIMAS

infectious-diseases infectious-disease-models

Updated Apr 26, 2019
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juanvesga / ide-modelling-R-ankara

Host site for the IDE modelling in R course, Ankara 2023

r epidemiology infectious-diseases

Updated Sep 4, 2025
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kpatera / tPRiors

tPRiors: Bayesian prevalence estimation

infectious-diseases elicitation burden-of-disease bayesian-priors prevalence-estimation disease-prevalence

Updated Feb 20, 2023
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weinbergerlab / pspline.inference

Stochastic modeling of non-linear characteristics of infectious disease outbreaks

r modeling infectious-diseases

Updated Jan 19, 2021
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