A SingleCell RNASeq pre-processing snakemake workflow

AlphaFold-based Protein Analysis Pipeline

A miniature example of a MultiQC plugin.

MultiQC plugin for the National Genomics Infrastructure in Stockholm, Sweden.

Estimate fastq-formatted read abundace in RNA-Seq analysis with Kallisto

MultiQC plugin dedicated to interact and analyze neuroimaging outputs.

Map and post-process your bams for SNP calling

A workflow automation script: demultiplex the library sequence, run quality checks, deliver to archiving and processing afterwards

A Snakemake workflow for quality control assessment of Illumina NGS data using FastQC and MultiQC

MultiQC plugin interacting with the Illumina Genologics Clarity LIMS

Snakemake workflow for Salmon quantification and FastQC quality controls

Professional MCP server for FastQC and MultiQC quality control analysis with advanced visualization and report parsing

Additional MultiQC report sections for 10x Genomics Xenium data.

A Snakemake Workflow for using PolyA_DB and UCSC LiftOver with CellRanger

Count your fastq-formatted rna-seq reads with Salmon

CCBR pipeline for preliminary QC, peak calling, differential chromatin accessibility analysis with ATACseq datasets 🌲

Code for basic MultiQC API service, providing run-time information about available updates.

Aggregate results from bioinformatics analyses across many samples into a single report.

Align reads over a reference genome, filter aligned-reads, and mark duplicates