Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs

Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis

tools for genetic genealogy and the analysis of consumer DNA test results

An Open Source Web Application for Genetic Data (SNPs) using 23AndMe and Data Crawling Technologies

tools for reading, writing, merging, and remapping SNPs

A fast 23andMe genome text file parser, now superseded by arv

A tool for simulating random mutations in any genome

Collection of Python scripts for parsing/analyses of RAD-seq data

vSNP -- validate SNPs

Visualize microbial evolution at the SNP level!

vSNP -- validate SNPs

Quality Control Summary Pipeline for Array-based Genome Studio Projects (idats, raw genotype quality)

Extract SNPs and accessory differences in closely related bacterial genomes from k-mers

A simple python library to identify the most likely strain from the population

🐳 Dockerized WES pipeline for variants identification in mathced tumor-normal samples

Most up-to-date scripts used in the Palumbi lab

Disease Clustering from Literature Based on Minimal Training Data

GRAMEP - Genome vaRiation Analysis from the Maximum Entropy Principle

Python program to parse and analyze raw 23andMe data

Modular workflow for Microbial Variant Calling and SNP diagnostics.