feat: adding a script to colorize differential expression analysis data in wikipathways#42
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cmeesters wants to merge 2 commits intowikipathways:develfrom
Open
feat: adding a script to colorize differential expression analysis data in wikipathways#42cmeesters wants to merge 2 commits intowikipathways:develfrom
cmeesters wants to merge 2 commits intowikipathways:develfrom
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This PR adds a script to colourize wikipath images with differential gene expression output (log2fold changes) from deseq2 output files.
To better illustrate: Locally
Rscript colorize_pathway.R --tsv condition_wt_vs_mt_l2fc.tsv --species="Drosophila melanogaster" --min-genes 3 --output-dir pathway_images --limit 5produces output like this:So far, the PR adds the script and basic documentation. No, dependency resolution or testing is provided. This is my first PR to a Bioconductor project. My R is a little rusty, I never contributed a package. Help is appreciated.