fix: update stale .env paths in cron script, docs, and package.json m…

…ain entry

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

EXTENDING.md

@@ -321,7 +321,7 @@ journalctl -u kb-server -f
 - `ProtectSystem=strict` and `NoNewPrivileges=true` for security hardening
 - `Restart=on-failure` with 5 attempts per 60 seconds
 
-Environment variables should be set in a `.env` file in the project root (loaded by `dotenv/config`).
+Environment variables should be set in `~/.knowledge-base/.env` (loaded automatically on startup). Run `kb setup` to generate this file.
 
 ### Recipe 5: Add New Ingestion Source Type
 

bin/cron-capture.sh

@@ -4,11 +4,11 @@ export NVM_DIR="${NVM_DIR:-$HOME/.nvm}"
 [ -s "$NVM_DIR/nvm.sh" ] && . "$NVM_DIR/nvm.sh"
 export PATH="$HOME/.nvm/versions/node/$(node -v 2>/dev/null || echo v22.22.1)/bin:/usr/local/bin:/usr/bin:$PATH"
 export OBSIDIAN_VAULT_PATH="${OBSIDIAN_VAULT_PATH:-$HOME/obsidian-vault}"
-KB_DIR="${KB_DIR:-$(cd "$(dirname "$0")/.." && pwd)}"
+KB_DATA_DIR="$HOME/.knowledge-base"
 
-# Load .env
-if [ -f "$KB_DIR/.env" ]; then
-  set -a; source "$KB_DIR/.env"; set +a
+# Load .env from canonical location
+if [ -f "$KB_DATA_DIR/.env" ]; then
+  set -a; source "$KB_DATA_DIR/.env"; set +a
 fi
 
 # 1. Sync X bookmarks
@@ -17,13 +17,12 @@ if [ -f ~/knowledgebase/sync-x-bookmarks.sh ]; then
 fi
 
 # 2. Capture X bookmarks to vault
-cd "$KB_DIR"
-node bin/kb.js capture-x 2>/dev/null
+kb capture-x 2>/dev/null
 
 # 3. Reindex vault (safety net)
-node bin/kb.js vault reindex 2>/dev/null
+kb vault reindex 2>/dev/null
 
 # 4. Auto-classify new clippings/inbox notes
-node bin/kb.js classify 2>/dev/null
+kb classify 2>/dev/null
 
 echo "[cron-capture] Done at $(date)"

package.json

@@ -6,7 +6,7 @@
   "bin": {
     "kb": "./bin/kb.js"
   },
-  "main": "./src/index.js",
+  "main": "./src/server.js",
   "engines": {
     "node": ">=18.0.0"
   },