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Resolve Mypy errors in v3 branch #1593

@jhamman

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@jhamman

The v3 branch needs some Mypy attention. As expected, our port of the zarrita code (see #1584) has left a number of mypy errors that would be great to resolve.

This ticket can be closed when:

  • we have CI running against the v3 codebase
  • we have zero mypy errors when checked in a github action

Marking this as help-wanted!

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