Collection of awesome LLM apps with AI Agents and RAG using OpenAI, Anthropic, Gemini and opensource models.

User-friendly AI Interface (Supports Ollama, OpenAI API, ...)

The bridge between the NCBI Gene Expression Omnibus and Bioconductor

RNA-seq aligner

🚀🤖 Crawl4AI: Open-source LLM Friendly Web Crawler & Scraper. Don't be shy, join here: https://discord.gg/jP8KfhDhyN

Tools to process and analyze deep sequencing data.

Genomic coordinates of problematic genomic regions as GRanges

Application for making ENCODE Blacklists

MACS -- Model-based Analysis of ChIP-Seq

🥢像老乡鸡🐔那样做饭。主要部分于2024年完工，非老乡鸡官方仓库。文字来自《老乡鸡菜品溯源报告》，并做归纳、编辑与整理。CookLikeHOC.

A bioconductor package with minimalist design for drawing elegant tracks or lollipop plot

A fast, clean, responsive Hugo theme.

ComfyUI custom nodes and web utilities for real-time AI generation and interaction

Video translation and dubbing tool powered by LLMs. The video translator offers 100 language translations and one-click full-process deployment. The video translation output is optimized for platfo…

Official code for "F5-TTS: A Fairytaler that Fakes Fluent and Faithful Speech with Flow Matching"

所有小初高、大学PDF教材。

a generalist algorithm for cellular segmentation with human-in-the-loop capabilities

FULL Augment Code, Claude Code, Cluely, CodeBuddy, Comet, Cursor, Devin AI, Junie, Kiro, Leap.new, Lovable, Manus, NotionAI, Orchids.app, Perplexity, Poke, Qoder, Replit, Same.dev, Trae, Traycer AI…

Materials for the Learn PyTorch for Deep Learning: Zero to Mastery course.

There can be more than Notion and Miro. AFFiNE(pronounced [ə‘fain]) is a next-gen knowledge base that brings planning, sorting and creating all together. Privacy first, open-source, customizable an…

Transforms complex documents like PDFs into LLM-ready markdown/JSON for your Agentic workflows.

Official Repo for "TheoremExplainAgent: Towards Video-based Multimodal Explanations for LLM Theorem Understanding" [ACL 2025 oral]

Open source code for AlphaFold 2.

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

Repository of Jupyter notebook tutorials for teaching the Deep Learning Course at the University of Amsterdam (MSc AI), Fall 2023

Unified Efficient Fine-Tuning of 100+ LLMs & VLMs (ACL 2024)

Graph Neural Network library made for Apple Silicon

Prompt, run, edit, and deploy full-stack web applications using any LLM you want!