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Extract contextual frames, perform IC with pybasic, and store target + IC frame in LanceDB #47

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Merged
d33bs merged 8 commits into from
Jul 17, 2024
Merged

Extract contextual frames, perform IC with pybasic, and store target + IC frame in LanceDB #47

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99487d0
initial outline and effort
d33bs May 29, 2024
f92e415
collect frame data
d33bs May 31, 2024
8241fe2
store images and add to lance
d33bs Jun 4, 2024
b99032a
linting
d33bs Jun 4, 2024
bba4f4e
simplify retrieve_ftp_file
d33bs Jun 8, 2024
79b1edb
add more context about why we read images
d33bs Jun 8, 2024
e018e5c
remove unnecessary comments
d33bs Jun 8, 2024
98df513
clarify the row dictionaries comment
d33bs Jun 8, 2024
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2 changes: 1 addition & 1 deletion 5.data_packaging/constants.py
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Original file line number Diff line number Diff line change
Expand Up @@ -31,7 +31,7 @@
]
]

PACKAGING_FILES = ["5.data_packaging/location_and_ch5_frame_image_data.parquet"]
PACKAGING_DATASETS = ["5.data_packaging/location_and_ch5_frame_image_data"]
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# FTP resources for accessing IDR
# See here for more:
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8 changes: 4 additions & 4 deletions 5.data_packaging/create_lancedb.py
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Expand Up @@ -8,7 +8,7 @@
import lancedb
import pandas as pd
import pyarrow as pa
from constants import DATA_FILES_W_COLNAMES, PACKAGING_FILES
from constants import DATA_FILES_W_COLNAMES, PACKAGING_DATASETS
from pyarrow import parquet

# specify a dir where the lancedb database may go and create lancedb client
Expand Down Expand Up @@ -59,10 +59,10 @@ def get_arrow_tbl_from_csv(filename_read: str) -> str:
mode="overwrite",
)

for filename in PACKAGING_FILES:
table = parquet.read_table(source=filename)
for dir in PACKAGING_DATASETS:
table = parquet.ParquetDataset(path_or_paths=dir).read()
ldb.create_table(
name=f"{filename.replace('/','.')}",
name=f"{dir.replace('/','.')}",
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data=table,
schema=table.schema,
mode="overwrite",
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