Porting custom functions#3
Merged
ktf merged 7 commits intoAug 12, 2020
Merged
Conversation
Member
|
could you do a PR in alidist for it? |
aalkin
pushed a commit
to aalkin/arrow
that referenced
this pull request
Aug 17, 2020
This PR enables tests for `ARROW_COMPUTE`, `ARROW_DATASET`, `ARROW_FILESYSTEM`, `ARROW_HDFS`, `ARROW_ORC`, and `ARROW_IPC` (default on). apache#7131 enabled a minimal set of tests as a starting point. I confirmed that these tests pass locally with the current master. In the current TravisCI environment, we cannot see this result due to a lot of error messages in `arrow-utility-test`. ``` $ git log | head -1 commit ed5f534 % ctest ... Start 1: arrow-array-test 1/51 Test alisw#1: arrow-array-test ..................... Passed 4.62 sec Start 2: arrow-buffer-test 2/51 Test alisw#2: arrow-buffer-test .................... Passed 0.14 sec Start 3: arrow-extension-type-test 3/51 Test alisw#3: arrow-extension-type-test ............ Passed 0.12 sec Start 4: arrow-misc-test 4/51 Test alisw#4: arrow-misc-test ...................... Passed 0.14 sec Start 5: arrow-public-api-test 5/51 Test alisw#5: arrow-public-api-test ................ Passed 0.12 sec Start 6: arrow-scalar-test 6/51 Test alisw#6: arrow-scalar-test .................... Passed 0.13 sec Start 7: arrow-type-test 7/51 Test alisw#7: arrow-type-test ...................... Passed 0.14 sec Start 8: arrow-table-test 8/51 Test alisw#8: arrow-table-test ..................... Passed 0.13 sec Start 9: arrow-tensor-test 9/51 Test alisw#9: arrow-tensor-test .................... Passed 0.13 sec Start 10: arrow-sparse-tensor-test 10/51 Test alisw#10: arrow-sparse-tensor-test ............. Passed 0.16 sec Start 11: arrow-stl-test 11/51 Test alisw#11: arrow-stl-test ....................... Passed 0.12 sec Start 12: arrow-concatenate-test 12/51 Test alisw#12: arrow-concatenate-test ............... Passed 0.53 sec Start 13: arrow-diff-test 13/51 Test alisw#13: arrow-diff-test ...................... Passed 1.45 sec Start 14: arrow-c-bridge-test 14/51 Test alisw#14: arrow-c-bridge-test .................. Passed 0.18 sec Start 15: arrow-io-buffered-test 15/51 Test alisw#15: arrow-io-buffered-test ............... Passed 0.20 sec Start 16: arrow-io-compressed-test 16/51 Test apache#16: arrow-io-compressed-test ............. Passed 3.48 sec Start 17: arrow-io-file-test 17/51 Test apache#17: arrow-io-file-test ................... Passed 0.74 sec Start 18: arrow-io-hdfs-test 18/51 Test apache#18: arrow-io-hdfs-test ................... Passed 0.12 sec Start 19: arrow-io-memory-test 19/51 Test apache#19: arrow-io-memory-test ................. Passed 2.77 sec Start 20: arrow-utility-test 20/51 Test apache#20: arrow-utility-test ...................***Failed 5.65 sec Start 21: arrow-threading-utility-test 21/51 Test apache#21: arrow-threading-utility-test ......... Passed 1.34 sec Start 22: arrow-compute-compute-test 22/51 Test apache#22: arrow-compute-compute-test ........... Passed 0.13 sec Start 23: arrow-compute-boolean-test 23/51 Test apache#23: arrow-compute-boolean-test ........... Passed 0.15 sec Start 24: arrow-compute-cast-test 24/51 Test apache#24: arrow-compute-cast-test .............. Passed 0.22 sec Start 25: arrow-compute-hash-test 25/51 Test apache#25: arrow-compute-hash-test .............. Passed 2.61 sec Start 26: arrow-compute-isin-test 26/51 Test apache#26: arrow-compute-isin-test .............. Passed 0.81 sec Start 27: arrow-compute-match-test 27/51 Test apache#27: arrow-compute-match-test ............. Passed 0.40 sec Start 28: arrow-compute-sort-to-indices-test 28/51 Test apache#28: arrow-compute-sort-to-indices-test ... Passed 3.33 sec Start 29: arrow-compute-nth-to-indices-test 29/51 Test apache#29: arrow-compute-nth-to-indices-test .... Passed 1.51 sec Start 30: arrow-compute-util-internal-test 30/51 Test apache#30: arrow-compute-util-internal-test ..... Passed 0.13 sec Start 31: arrow-compute-add-test 31/51 Test apache#31: arrow-compute-add-test ............... Passed 0.12 sec Start 32: arrow-compute-aggregate-test 32/51 Test apache#32: arrow-compute-aggregate-test ......... Passed 14.70 sec Start 33: arrow-compute-compare-test 33/51 Test apache#33: arrow-compute-compare-test ........... Passed 7.96 sec Start 34: arrow-compute-take-test 34/51 Test apache#34: arrow-compute-take-test .............. Passed 4.80 sec Start 35: arrow-compute-filter-test 35/51 Test apache#35: arrow-compute-filter-test ............ Passed 8.23 sec Start 36: arrow-dataset-dataset-test 36/51 Test apache#36: arrow-dataset-dataset-test ........... Passed 0.25 sec Start 37: arrow-dataset-discovery-test 37/51 Test apache#37: arrow-dataset-discovery-test ......... Passed 0.13 sec Start 38: arrow-dataset-file-ipc-test 38/51 Test apache#38: arrow-dataset-file-ipc-test .......... Passed 0.21 sec Start 39: arrow-dataset-file-test 39/51 Test apache#39: arrow-dataset-file-test .............. Passed 0.12 sec Start 40: arrow-dataset-filter-test 40/51 Test apache#40: arrow-dataset-filter-test ............ Passed 0.16 sec Start 41: arrow-dataset-partition-test 41/51 Test apache#41: arrow-dataset-partition-test ......... Passed 0.13 sec Start 42: arrow-dataset-scanner-test 42/51 Test apache#42: arrow-dataset-scanner-test ........... Passed 0.20 sec Start 43: arrow-filesystem-test 43/51 Test apache#43: arrow-filesystem-test ................ Passed 1.62 sec Start 44: arrow-hdfs-test 44/51 Test apache#44: arrow-hdfs-test ...................... Passed 0.13 sec Start 45: arrow-feather-test 45/51 Test apache#45: arrow-feather-test ................... Passed 0.91 sec Start 46: arrow-ipc-read-write-test 46/51 Test apache#46: arrow-ipc-read-write-test ............ Passed 5.77 sec Start 47: arrow-ipc-json-simple-test 47/51 Test apache#47: arrow-ipc-json-simple-test ........... Passed 0.16 sec Start 48: arrow-ipc-json-test 48/51 Test apache#48: arrow-ipc-json-test .................. Passed 0.27 sec Start 49: arrow-json-integration-test 49/51 Test apache#49: arrow-json-integration-test .......... Passed 0.13 sec Start 50: arrow-json-test 50/51 Test apache#50: arrow-json-test ...................... Passed 0.26 sec Start 51: arrow-orc-adapter-test 51/51 Test apache#51: arrow-orc-adapter-test ............... Passed 1.92 sec 98% tests passed, 1 tests failed out of 51 Label Time Summary: arrow-tests = 27.38 sec (27 tests) arrow_compute = 45.11 sec (14 tests) arrow_dataset = 1.21 sec (7 tests) arrow_ipc = 6.20 sec (3 tests) unittest = 79.91 sec (51 tests) Total Test time (real) = 79.99 sec The following tests FAILED: 20 - arrow-utility-test (Failed) Errors while running CTest ``` Closes apache#7142 from kiszk/ARROW-8754 Authored-by: Kazuaki Ishizaki <ishizaki@jp.ibm.com> Signed-off-by: Sutou Kouhei <kou@clear-code.com>
aalkin
pushed a commit
to aalkin/arrow
that referenced
this pull request
Aug 17, 2020
…lure on big-endian platforms This PR gets an element data using an endianless API in Flatbuffer instead of getting a pointer. This can fix a failure of TestPlasmaSerialization.DeleteReply in plasma-serialization-tests. Without this PR ``` 1: [==========] Running 14 tests from 1 test case. 1: [----------] Global test environment set-up. 1: [----------] 14 tests from TestPlasmaSerialization 1: [ RUN ] TestPlasmaSerialization.CreateRequest 1: /home/ishizaki/Arrow/arrow/cpp/src/plasma/test/serialization_tests.cc:87: file path: '/tmp/ser-test-kk8t88p9/fileXXXXXX' 1: [ OK ] TestPlasmaSerialization.CreateRequest (2 ms) 1: [ RUN ] TestPlasmaSerialization.CreateReply 1: /home/ishizaki/Arrow/arrow/cpp/src/plasma/test/serialization_tests.cc:87: file path: '/tmp/ser-test-97gspx5v/fileXXXXXX' 1: [ OK ] TestPlasmaSerialization.CreateReply (0 ms) 1: [ RUN ] TestPlasmaSerialization.SealRequest 1: /home/ishizaki/Arrow/arrow/cpp/src/plasma/test/serialization_tests.cc:87: file path: '/tmp/ser-test-dkksx76p/fileXXXXXX' 1: [ OK ] TestPlasmaSerialization.SealRequest (1 ms) 1: [ RUN ] TestPlasmaSerialization.SealReply 1: /home/ishizaki/Arrow/arrow/cpp/src/plasma/test/serialization_tests.cc:87: file path: '/tmp/ser-test-oqbs9vm0/fileXXXXXX' 1: [ OK ] TestPlasmaSerialization.SealReply (0 ms) 1: [ RUN ] TestPlasmaSerialization.GetRequest 1: /home/ishizaki/Arrow/arrow/cpp/src/plasma/test/serialization_tests.cc:87: file path: '/tmp/ser-test-d7q6h5q4/fileXXXXXX' 1: [ OK ] TestPlasmaSerialization.GetRequest (1 ms) 1: [ RUN ] TestPlasmaSerialization.GetReply 1: /home/ishizaki/Arrow/arrow/cpp/src/plasma/test/serialization_tests.cc:87: file path: '/tmp/ser-test-sxsncs72/fileXXXXXX' 1: [ OK ] TestPlasmaSerialization.GetReply (1 ms) 1: [ RUN ] TestPlasmaSerialization.ReleaseRequest 1: /home/ishizaki/Arrow/arrow/cpp/src/plasma/test/serialization_tests.cc:87: file path: '/tmp/ser-test-njc3g3b5/fileXXXXXX' 1: [ OK ] TestPlasmaSerialization.ReleaseRequest (0 ms) 1: [ RUN ] TestPlasmaSerialization.ReleaseReply 1: /home/ishizaki/Arrow/arrow/cpp/src/plasma/test/serialization_tests.cc:87: file path: '/tmp/ser-test-917ybxmo/fileXXXXXX' 1: [ OK ] TestPlasmaSerialization.ReleaseReply (1 ms) 1: [ RUN ] TestPlasmaSerialization.DeleteRequest 1: /home/ishizaki/Arrow/arrow/cpp/src/plasma/test/serialization_tests.cc:87: file path: '/tmp/ser-test-1kwauefv/fileXXXXXX' 1: [ OK ] TestPlasmaSerialization.DeleteRequest (0 ms) 1: [ RUN ] TestPlasmaSerialization.DeleteReply 1: /home/ishizaki/Arrow/arrow/cpp/src/plasma/test/serialization_tests.cc:87: file path: '/tmp/ser-test-4ftq28pq/fileXXXXXX' 1: /home/ishizaki/Arrow/arrow/cpp/src/plasma/test/serialization_tests.cc:271: Failure 1: Value of: error_vec[0] == PlasmaError::ObjectExists 1: Actual: false 1: Expected: true 1: [ FAILED ] TestPlasmaSerialization.DeleteReply (1 ms) 1: [ RUN ] TestPlasmaSerialization.EvictRequest 1: /home/ishizaki/Arrow/arrow/cpp/src/plasma/test/serialization_tests.cc:87: file path: '/tmp/ser-test-vl97870w/fileXXXXXX' 1: [ OK ] TestPlasmaSerialization.EvictRequest (0 ms) 1: [ RUN ] TestPlasmaSerialization.EvictReply 1: /home/ishizaki/Arrow/arrow/cpp/src/plasma/test/serialization_tests.cc:87: file path: '/tmp/ser-test-3am9a6rv/fileXXXXXX' 1: [ OK ] TestPlasmaSerialization.EvictReply (1 ms) 1: [ RUN ] TestPlasmaSerialization.DataRequest 1: /home/ishizaki/Arrow/arrow/cpp/src/plasma/test/serialization_tests.cc:87: file path: '/tmp/ser-test-plye5tmm/fileXXXXXX' 1: [ OK ] TestPlasmaSerialization.DataRequest (0 ms) 1: [ RUN ] TestPlasmaSerialization.DataReply 1: /home/ishizaki/Arrow/arrow/cpp/src/plasma/test/serialization_tests.cc:87: file path: '/tmp/ser-test-mbu6lqsq/fileXXXXXX' 1: [ OK ] TestPlasmaSerialization.DataReply (1 ms) 1: [----------] 14 tests from TestPlasmaSerialization (9 ms total) 1: 1: [----------] Global test environment tear-down 1: [==========] 14 tests from 1 test case ran. (9 ms total) 1: [ PASSED ] 13 tests. 1: [ FAILED ] 1 test, listed below: 1: [ FAILED ] TestPlasmaSerialization.DeleteReply 1: 1: 1 FAILED TEST 1: /home/ishizaki/Arrow/arrow/cpp/src/plasma 1/3 Test alisw#1: plasma-serialization-tests .......***Failed 0.27 sec ... 3/3 Test alisw#3: plasma-external-store-tests ...... Passed 0.46 sec ``` With this PR ``` $ ctest Test project /home/ishizaki/Arrow/arrow/cpp/src/plasma Start 1: plasma-serialization-tests 1/3 Test alisw#1: plasma-serialization-tests ....... Passed 0.26 sec Start 2: plasma-client-tests 2/3 Test alisw#2: plasma-client-tests .............. Passed 14.99 sec Start 3: plasma-external-store-tests 3/3 Test alisw#3: plasma-external-store-tests ...... Passed 0.49 sec 100% tests passed, 0 tests failed out of 3 Label Time Summary: plasma-tests = 15.74 sec (3 tests) unittest = 15.74 sec (3 tests) Total Test time (real) = 15.74 sec ``` Closes apache#7148 from kiszk/ARROW-8759 Authored-by: Kazuaki Ishizaki <ishizaki@jp.ibm.com> Signed-off-by: Antoine Pitrou <antoine@python.org>
ktf
pushed a commit
that referenced
this pull request
Jun 21, 2021
From a deadlocked run... ``` #0 0x00007f8a5d48dccd in __lll_lock_wait () from /lib64/libpthread.so.0 #1 0x00007f8a5d486f05 in pthread_mutex_lock () from /lib64/libpthread.so.0 #2 0x00007f8a566e7e89 in arrow::internal::FnOnce<void ()>::FnImpl<arrow::Future<Aws::Utils::Outcome<Aws::S3::Model::ListObjectsV2Result, Aws::S3::S3Error> >::Callback<arrow::fs::(anonymous namespace)::TreeWalker::ListObjectsV2Handler> >::invoke() () from /arrow/r/check/arrow.Rcheck/arrow/libs/arrow.so #3 0x00007f8a5650efa0 in arrow::FutureImpl::AddCallback(arrow::internal::FnOnce<void ()>) () from /arrow/r/check/arrow.Rcheck/arrow/libs/arrow.so #4 0x00007f8a566e67a9 in arrow::fs::(anonymous namespace)::TreeWalker::ListObjectsV2Handler::SpawnListObjectsV2() () from /arrow/r/check/arrow.Rcheck/arrow/libs/arrow.so #5 0x00007f8a566e723f in arrow::fs::(anonymous namespace)::TreeWalker::WalkChild(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, int) () from /arrow/r/check/arrow.Rcheck/arrow/libs/arrow.so #6 0x00007f8a566e827d in arrow::internal::FnOnce<void ()>::FnImpl<arrow::Future<Aws::Utils::Outcome<Aws::S3::Model::ListObjectsV2Result, Aws::S3::S3Error> >::Callback<arrow::fs::(anonymous namespace)::TreeWalker::ListObjectsV2Handler> >::invoke() () from /arrow/r/check/arrow.Rcheck/arrow/libs/arrow.so #7 0x00007f8a5650efa0 in arrow::FutureImpl::AddCallback(arrow::internal::FnOnce<void ()>) () from /arrow/r/check/arrow.Rcheck/arrow/libs/arrow.so #8 0x00007f8a566e67a9 in arrow::fs::(anonymous namespace)::TreeWalker::ListObjectsV2Handler::SpawnListObjectsV2() () from /arrow/r/check/arrow.Rcheck/arrow/libs/arrow.so #9 0x00007f8a566e723f in arrow::fs::(anonymous namespace)::TreeWalker::WalkChild(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, int) () from /arrow/r/check/arrow.Rcheck/arrow/libs/arrow.so #10 0x00007f8a566e74b1 in arrow::fs::(anonymous namespace)::TreeWalker::DoWalk() () from /arrow/r/check/arrow.Rcheck/arrow/libs/arrow.so ``` The callback `ListObjectsV2Handler` is being called recursively and the mutex is non-reentrant thus deadlock. To fix it I got rid of the mutex on `TreeWalker` by using `arrow::util::internal::TaskGroup` instead of manually tracking the #/status of in-flight requests. Closes apache#9842 from westonpace/bugfix/arrow-12040 Lead-authored-by: Weston Pace <weston.pace@gmail.com> Co-authored-by: Antoine Pitrou <antoine@python.org> Signed-off-by: Antoine Pitrou <antoine@python.org>
ktf
pushed a commit
that referenced
this pull request
Aug 23, 2021
Before change:
```
Direct leak of 65536 byte(s) in 1 object(s) allocated from:
#0 0x522f09 in
#1 0x7f28ae5826f4 in
#2 0x7f28ae57fa5d in
#3 0x7f28ae58cb0f in
#4 0x7f28ae58bda0 in
...
```
After change:
```
Direct leak of 65536 byte(s) in 1 object(s) allocated from:
#0 0x522f09 in posix_memalign (/build/cpp/debug/arrow-dataset-file-csv-test+0x522f09)
#1 0x7f28ae5826f4 in arrow::(anonymous namespace)::SystemAllocator::AllocateAligned(long, unsigned char**) /arrow/cpp/src/arrow/memory_pool.cc:213:24
#2 0x7f28ae57fa5d in arrow::BaseMemoryPoolImpl<arrow::(anonymous namespace)::SystemAllocator>::Allocate(long, unsigned char**) /arrow/cpp/src/arrow/memory_pool.cc:405:5
#3 0x7f28ae58cb0f in arrow::PoolBuffer::Reserve(long) /arrow/cpp/src/arrow/memory_pool.cc:717:9
#4 0x7f28ae58bda0 in arrow::PoolBuffer::Resize(long, bool) /arrow/cpp/src/arrow/memory_pool.cc:741:7
...
```
Closes apache#10498 from westonpace/feature/ARROW-13027--c-fix-asan-stack-traces-in-ci
Authored-by: Weston Pace <weston.pace@gmail.com>
Signed-off-by: Antoine Pitrou <antoine@python.org>
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
2 participants
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
@ktf seems to compile just fine, though arrow 1.0 needs an extra dependency utf8proc (available in homebrew).