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[Documentation] Pin version of mkdocs-material and used plugins (#1029) build-documentation #277: Commit db559c7 pushed by xonq
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[PHB] Initialize automated testing (#999) build-documentation #276: Commit 9fb51de pushed by MrTheronJ
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[Metabuli | Fastp] Init Metabuli standalone workflow (#1006) build-documentation #275: Commit 6a0f127 pushed by MrTheronJ
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[Bracken] Add Bracken to kraken2 tasks (#1005) build-documentation #274: Commit 2e087a5 pushed by xonq
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bump year (#1019) build-documentation #273: Commit d908fd1 pushed by xonq
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[Zip_Column_Content] Resolve overwriting of identical filenames (#1009) build-documentation #272: Commit 7c73025 pushed by xonq
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[AMRsearch] Parse Resistance Outputs (#1002) build-documentation #271: Commit 86859de pushed by xonq
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[Snippy_Streamline] Expose snp_dist resource inputs (#1012) build-documentation #270: Commit 474e00a pushed by xonq
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[Microreact] Adding New Workflow, Microreact_Export (#937) build-documentation #269: Commit bd8abb4 pushed by Michal-Babins
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[Documentation] Update qc_check documentation (#1014) build-documentation #268: Commit 0895eb8 pushed by xonq
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[iVar Version] Include iVar Consensus Version in assembly_method (#1011) build-documentation #267: Commit 52de103 pushed by xonq
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update stxtyper to 1.0.45 (#1004) build-documentation #266: Commit 480cb6f pushed by xonq
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[KSNP4] Increase Memory to 16 GB (#1010) build-documentation #265: Commit a3b0ba4 pushed by xonq
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build-documentation build-documentation #264: by xonq
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[Assembly Stats] Update samtools (#1000) build-documentation #263: Commit 4ea22c1 pushed by awh082834
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[v4.1.0] Release preparation (#995) build-documentation #262: Commit 78aae56 pushed by awh082834
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[bbduk] Add pre-alignment primer trimming (#998) build-documentation #261: Commit 8e9c97e pushed by xonq
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[QC_Check | Flu_Track] Refactor and implement segment QC-check (#980) build-documentation #260: Commit 9a5dccd pushed by xonq
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set nextclade outputs to be generic (#997) build-documentation #259: Commit 32ccea7 pushed by xonq
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[Flu Track] Expose and deinterleave IRMA aligned reads (#990) build-documentation #258: Commit acc7f24 pushed by MrTheronJ
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[Basespace_Fetch] Extending grep -E to project ID track (#981) build-documentation #257: Commit 528d303 pushed by xonq
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[Documentation] Update BaseSpace_Fetch_PHB SOP to v4 (#994) build-documentation #256: Commit 865e6ba pushed by xonq
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[Documentation] Update SOP entries for TheiaProk Illumina PE v3 and v… build-documentation #255: Commit f2127d9 pushed by xonq
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[Organism Parameters] Update nextclade dataset tags and pangolin dock… build-documentation #254: Commit 1b8ca2f pushed by MrTheronJ
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[Vibecheck] Fix subsampling arg declaration (#982) build-documentation #253: Commit 3eea319 pushed by awh082834
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