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update python dependencies & build sections#259

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bouweandela merged 4 commits into
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Apr 22, 2022
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update python dependencies & build sections#259
bouweandela merged 4 commits into
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python_deps_and_build

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@egpbos

@egpbos egpbos commented Apr 6, 2022 •
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This is a continuation and further update to 2022 of #218. To reiterate from #218:

Primarily, I added the recommendation from the discussion in #156. Simultaneously, I merged the two sections on Python dependencies & packages (I think the Building packages should be a subsection here, it's really intertwined). Also trimmed the existing text here and there, it was rather verbose, with lots of examples of commands that you can also easily find online with the right keywords (which we provide here).

On top of that, this PR has a few extra tweaks:

  • I added a note about using Anaconda servers, as we discussed in the Software Sustainability SIG and elsewhere.
  • Made venv the first choice instead of virtualenv.
  • Removed all mention of setup.py in favor of setup.cfg and pyproject.toml, since setup.py has been deprecated in favor of those configuration files.
  • Removed TravisCI mentions.

This was referenced Apr 6, 2022
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@egpbos egpbos requested a review from bouweandela April 6, 2022 14:03
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egpbos commented Apr 7, 2022

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Note to reviewer: the link checker is failing because of dead links in master. We should make a separate PR to fix them.

@LourensVeen LourensVeen mentioned this pull request Apr 7, 2022
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egpbos commented Apr 8, 2022

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Any further comments on this? Note that everything in 3bf470e was already reviewed by @bouweandela in 2020. I changed a few things in the three commits after that, so for ease of reviewing, just checking those three commits should suffice.

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bouweandela reviewed Apr 8, 2022
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Thanks for the much needed updates!

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egpbos added a commit that referenced this pull request Apr 8, 2022
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d6ee7e8 
The first comments were given in #219 already, but still apply here.
Later also in #259 comments were
added that were applied in this commit. Furthermore, some additional
minor edits and an update of the wheels description.

Co-authored-by: Bouwe Andela <b.andela@esciencecenter.nl>
@egpbos egpbos force-pushed the python_deps_and_build branch from fa259f5 to d6ee7e8 Compare April 8, 2022 10:14
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egpbos commented Apr 8, 2022

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Rebased loose review commits into one big one for cleaner history.

@egpbos egpbos requested a review from bouweandela April 8, 2022 10:15
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egpbos commented Apr 13, 2022

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@bouweandela anything further before approving? :)

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bouweandela commented Apr 13, 2022

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Could you please have a look at the unresolved comments? And at the merge conflict?

@egpbos

egpbos commented Apr 14, 2022 •
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I replied to the unresolved comments, waiting for your reply :) I will resolve the merge conflict, it's just because I was doing 5 separate PRs in a row on the same file.

egpbos added a commit that referenced this pull request Apr 14, 2022
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b9570bc 
The first comments were given in #219 already, but still apply here.
Later also in #259 comments were
added that were applied in this commit. Furthermore, some additional
minor edits and an update of the wheels description.

Co-authored-by: Bouwe Andela <b.andela@esciencecenter.nl>
@egpbos egpbos force-pushed the python_deps_and_build branch from d6ee7e8 to b9570bc Compare April 14, 2022 20:36
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egpbos commented Apr 14, 2022

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Rebased to fix merge conflicts. Can you take a look at the two unresolved discussions?

bouweandela
bouweandela reviewed Apr 15, 2022
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bouweandela commented Apr 15, 2022 •
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My apologies, I wrote replies to your comments a few days ago but it looks like I did not use the 'Finish your review' button, so you couldn't see them. And then I was waiting for you to answer them, which obviously didn't work 😆

@egpbos @bouweandela
apply review comments
74c119c 
The first comments were given in #219 already, but still apply here.
Later also in #259 comments were
added that were applied in this commit. Furthermore, some additional
minor edits and an update of the wheels description.

Co-authored-by: Bouwe Andela <b.andela@esciencecenter.nl>
@egpbos egpbos force-pushed the python_deps_and_build branch from 8b983cc to 74c119c Compare April 20, 2022 11:25
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egpbos commented Apr 20, 2022

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@bouweandela comments resolved, please make a final check :)

@egpbos egpbos requested a review from bouweandela April 20, 2022 11:26
bouweandela
bouweandela approved these changes Apr 22, 2022
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Thanks!

@bouweandela bouweandela merged commit 18eedee into master Apr 22, 2022
@bouweandela bouweandela deleted the python_deps_and_build branch April 22, 2022 07:41
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